RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 FKBPLQ9UIM3 349 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TMA7Q9Y2S6 64 aaKnown RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 MTO1Q9Y2Z2 717 aaKnown RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 CDK5RAP2Q96SN8 1893 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TPP1O14773 563 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 KLHL2O95198 593 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TFEBP19484 476 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TFE3P19532 575 aaPredicted RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 GRIA4P48058 902 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 KCNK10P57789 538 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SCAPQ12770 1279 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SEMA5AQ13591 1074 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TP53BP2Q13625 1128 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TCEAL1Q15170 157 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 KYAT3Q6YP21 454 aaKnown RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 KIAA0408Q6ZU52 694 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 ZMIZ2Q8NF64 920 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 MDM1Q8TC05 714 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 AENQ8WTP8 325 aaKnown RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 LINC01599Q8WXQ3 324 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 FAM3CQ92520 227 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 KCNN1Q92952 543 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 LRIG1Q96JA1 1093 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 ZNF514Q96K75 400 aaPredicted RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 SH3GL1Q99961 368 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SLC46A2Q9BY10 475 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 WDR26Q9H7D7 661 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 NOD2Q9HC29 1040 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 A0A0D9SEW6 157 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TCRBV9S1A1TA0A576 114 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 LILRB3O75022 631 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TNFRSF8P28908 595 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 PLK1P53350 603 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 RPL26P61254 145 aaKnown RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 IL1RL1Q01638 556 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 NR6A1Q15406 480 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 LDLRAP1Q5SW96 308 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 HIBCHQ6NVY1 386 aaPredicted RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 SCML4Q8N228 414 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 ACMSDQ8TDX5 336 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TCEAL4Q96EI5 215 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 ASB2Q96Q27 587 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 PBX4Q9BYU1 374 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 MRPL46Q9H2W6 279 aaKnown RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 DPEP2Q9H4A9 486 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 CWH43Q9H720 699 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 RXFP1Q9HBX9 757 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 DIABLOQ9NR28 239 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TUBA8Q9NY65 449 aaPredicted RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 SOX13Q9UN79 622 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 RPL26L1Q9UNX3 145 aaKnown RBP9.82□□□□□ -0.84
LIG3-216ENST00000593099 GSAPA4D1B5 854 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 ANKDD1BA6NHY2 528 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SLC7A4O43246 635 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SERPINE1P05121 402 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 ITGA2BP08514 1039 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 MSL3P1P0C860 447 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 NTSR1P30989 418 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 VIPR1P32241 457 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 GPC1P35052 558 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SOAT1P35610 550 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 NEK2P51955 445 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SEL1L3Q68CR1 1132 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 ANKRD54Q6NXT1 300 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TTC27Q6P3X3 843 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SERPINA9Q86WD7 417 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 KRT78Q8N1N4 520 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 OR10G6Q8NH81 332 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 AZIN2Q96A70 460 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 LINGO1Q96FE5 620 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 CAPN1P07384 714 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 ANXA6P08133 673 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 ZNF30P17039 623 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 IRS1P35568 1242 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 CHRNA4P43681 627 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 GALNTL6Q49A17 601 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 INO80DQ53TQ3 878 aaPredicted RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 OMA1Q96E52 524 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 HGH1Q9BTY7 390 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 MRPL1Q9BYD6 325 aaKnown RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 DNMT3BQ9UBC3 853 aaKnown RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 ORC6Q9Y5N6 252 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 KCNE2Q9Y6J6 123 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 LCHNA4D1U4 455 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 PIGNO95427 931 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 SRPRAP08240 638 aaKnown RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 HOXA9P31269 272 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 SERPINB4P48594 390 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 SLC7A9P82251 487 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 SEMG2Q02383 582 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 PLA2G4EQ3MJ16 856 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 GPR33Q49SQ1 333 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 RNASEH2BQ5TBB1 312 aaKnown RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 PACS1Q6VY07 963 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 TCP10LQ8TDR4 215 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 FUT8Q9BYC5 575 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 LINC00597Q9H2U6 94 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 MID1IP1Q9NPA3 183 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 COLEC10Q9Y6Z7 277 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 WDR90Q96KV7 1748 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms