RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 DUS1LQ6P1R4 473 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 FAM122CQ6P4D5 195 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 SPSB3Q6PJ21 355 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 DPPA4Q7L190 304 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 CHERPQ8IWX8 916 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 MAGEC3Q8TD91 643 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 ARHGEF26Q96DR7 871 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 RRNAD1Q96FB5 475 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 IGSF21Q96ID5 467 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 FAM84BQ96KN1 310 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 PPP1R13BQ96KQ4 1090 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 ACOX2Q99424 681 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 DDX31Q9H8H2 851 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 RRP7BPQ9NSQ0 103 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 ACSS1Q9NUB1 689 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 ZNF224Q9NZL3 707 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 C1RLQ9NZP8 487 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 KCNS2Q9ULS6 477 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 LRP12Q9Y561 859 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 SAA2-SAA4A0A096LPE2 208 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 GOLGA6L9A6NEM1 432 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 PGPEP1LA6NFU8 196 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 LIPT2A6NK58 231 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 HNRNPCL2B2RXH8 293 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 F5H0A9 414 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 CLGNO14967 610 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 DDX58O95786 925 aaKnown RBP4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 EGFP01133 1207 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 LINC00271P0C7V0 271 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 CLCN3P51790 818 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 BRWD1-AS2P59051 145 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 CSNK2A1P68400 391 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 FOXM1Q08050 763 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 NIPAL4Q0D2K0 466 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 GRIK2Q13002 908 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 MAMLD1Q13495 774 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 CDONQ4KMG0 1287 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 SNX30Q5VWJ9 437 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 NCEH1Q6PIU2 408 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 BHLHA9Q7RTU4 235 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 CACNA2D4Q7Z3S7 1137 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 TBC1D1Q86TI0 1168 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 ARHGAP12Q8IWW6 846 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 NGEFQ8N5V2 710 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 CSNK2A3Q8NEV1 391 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 SGCDQ92629 289 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 ORAI1Q96D31 301 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 TMEM19Q96HH6 336 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 GRAMD2BQ96HH9 432 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 PCDH9Q9HC56 1237 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 MCM9Q9NXL9 1143 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 CORO1CQ9ULV4 474 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 PROCRQ9UNN8 238 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 VDAC3Q9Y277 283 aa4.53□□□□□ -1.68
SMCHD1-204ENST00000581226 ITIH6Q6UXX5 1313 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 A0A0G2JPF8 293 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 C1orf226A1L170 272 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 PI4KAP2A4QPH2 592 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 SMTNL1A8MU46 457 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 HNRNPCL3B7ZW38 293 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 SPINT2O43291 252 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 NDUFS3O75489 264 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 JRKO75564 520 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 BAIAP3O94812 1187 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 HNRNPCL4P0DMR1 293 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 LAMP2P13473 410 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 C1orf122Q6ZSJ8 110 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 ZNF34Q8IZ26 560 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 DCP1BQ8IZD4 617 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 ANKRD52Q8NB46 1076 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 OR2AK2Q8NG84 335 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 POMGNT1Q8WZA1 660 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 APBB2Q92870 758 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 ZKSCAN4Q969J2 545 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 CMKLR1Q99788 373 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 ITPAQ9BY32 194 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 SPRY4Q9C004 299 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 MUC13Q9H3R2 512 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 RETREG1Q9H6L5 497 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 SEBOXQ9HB31 216 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 LOXL2Q9Y4K0 774 aa4.52□□□□□ -1.69
SMCHD1-204ENST00000581226 TRIP12Q14669 1992 aaPredicted RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 SLC16A5O15375 505 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 SCGB1D1O95968 90 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 SNRNP70P08621 437 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 RARGP13631 454 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 CDH2P19022 906 aaPredicted RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 HOXC9P31274 260 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 PPARGP37231 505 aaPredicted RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 TMPOP42166 694 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 PIK3CAP42336 1068 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 GAS1P54826 345 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 GEMIN4P57678 1058 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 NLRP5P59047 1200 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 DCAF7P61962 342 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 PDE1BQ01064 536 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 EIF4A2Q14240 407 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 NAB2Q15742 525 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 ZSCAN23Q3MJ62 389 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 KLHL22Q53GT1 634 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms