RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ATXN7L2Q5T6C5 722 aaPredicted RBP16.09■□□□□ 0.17
VPS53-218ENST00000575207 FCRL6Q6DN72 434 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 PELI3Q8N2H9 469 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 UBR7Q8N806 425 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 FBXL13Q8NEE6 735 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 WDR77Q9BQA1 342 aaPredicted RBP16.09■□□□□ 0.17
VPS53-218ENST00000575207 TSPAN11A1L157 253 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 PPP1R3GB7ZBB8 358 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 TEX33O43247 280 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 GTF2H1P32780 548 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 ACADSBP45954 432 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 MAPK9P45984 424 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 SEPHS1P49903 392 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 GEMIN4P57678 1058 aaKnown RBP16.08■□□□□ 0.16
VPS53-218ENST00000575207 MCCD1P59942 119 aaPredicted RBP16.08■□□□□ 0.16
VPS53-218ENST00000575207 YWHAEP62258 255 aaKnown RBP16.08■□□□□ 0.16
VPS53-218ENST00000575207 GNA12Q03113 381 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 RAD51Q06609 339 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 CUL2Q13617 745 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 ARTNQ5T4W7 220 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 PWWP2BQ6NUJ5 590 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 CYB5D1Q6P9G0 228 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 SMR3AQ99954 134 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 C7orf25Q9BPX7 421 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 KCTD10Q9H3F6 313 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 CUEDC2Q9H467 287 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 THAP9Q9H5L6 903 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 ZBTB20Q9HC78 741 aaPredicted RBP16.08■□□□□ 0.16
VPS53-218ENST00000575207 ST7Q9NRC1 585 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 SERTAD1Q9UHV2 236 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 SNX7Q9UNH6 387 aa16.08■□□□□ 0.16
VPS53-218ENST00000575207 TRGV8A0A0C4DH27 118 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 PDXKO00764 312 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 PCDH17O14917 1159 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 IVLP07476 585 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 GPD2P43304 727 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 KCNK10P57789 538 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 CSNK1G2P78368 415 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 PDE1BQ01064 536 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 NFATC2Q13469 925 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 ATP1A4Q13733 1029 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 E2F4Q16254 413 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 ERAP2Q6P179 960 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 COG1Q8WTW3 980 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 NUDT8Q8WV74 236 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 NINJ1Q92982 152 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 MED15Q96RN5 788 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 TEX101Q9BY14 249 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.07■□□□□ 0.16
VPS53-218ENST00000575207 TTYH3Q9C0H2 523 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 PDE7BQ9NP56 450 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 OLAHQ9NV23 265 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 TCFL5Q9UL49 500 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 SLC17A4Q9Y2C5 497 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 CSAG2Q9Y5P2 127 aa16.07■□□□□ 0.16
VPS53-218ENST00000575207 DOCK4Q8N1I0 1966 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 I6L893 689 aaPredicted RBP16.06■□□□□ 0.16
VPS53-218ENST00000575207 CLDN14O95500 239 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 RAB40ALP0C0E4 278 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 KRT13P13646 458 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 GM2AP17900 193 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 CDSNQ15517 529 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 TAF5Q15542 800 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 ZNF324BQ6AW86 544 aaPredicted RBP16.06■□□□□ 0.16
VPS53-218ENST00000575207 GALNT16Q8N428 558 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 PPP4R1Q8TF05 950 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 KLHL6Q8WZ60 621 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 GDAP1L1Q96MZ0 367 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 SLC2A13Q96QE2 648 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 STN1Q9H668 368 aaKnown RBP16.06■□□□□ 0.16
VPS53-218ENST00000575207 ANLNQ9NQW6 1124 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 PHPT1Q9NRX4 125 aaPredicted RBP16.06■□□□□ 0.16
VPS53-218ENST00000575207 NDFIP2Q9NV92 336 aa16.06■□□□□ 0.16
VPS53-218ENST00000575207 EML2O95834 649 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 CA7P43166 264 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 TDGF1P3P51864 188 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 ADORA2A-AS1P86434 159 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 B3GNTL1Q67FW5 361 aaPredicted RBP16.05■□□□□ 0.16
VPS53-218ENST00000575207 PLEKHA7Q6IQ23 1121 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 LRRC31Q6UY01 552 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 DEFB106AQ8N104 65 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 STK32AQ8WU08 396 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 SCARF2Q96GP6 870 aaPredicted RBP16.05■□□□□ 0.16
VPS53-218ENST00000575207 C1orf74Q96LT6 269 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 TBC1D10AQ9BXI6 508 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 CCM2LQ9NUG4 571 aaPredicted RBP16.05■□□□□ 0.16
VPS53-218ENST00000575207 RARRES3Q9UL19 164 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 ATP8A1Q9Y2Q0 1164 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 SNX10Q9Y5X0 201 aa16.05■□□□□ 0.16
VPS53-218ENST00000575207 LILRA5A6NI73 299 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 ACVRL1P37023 503 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 NASPP49321 788 aaPredicted RBP16.04■□□□□ 0.16
VPS53-218ENST00000575207 MXI1P50539 228 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 SOX8P57073 446 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 RALGDSQ12967 914 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 NME3Q13232 169 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 FAM69BQ5VUD6 431 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 FAM180AQ6UWF9 173 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 LIPIQ6XZB0 460 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 PRSS42Q7Z5A4 293 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms