RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SMC6Q96SB8 1091 aa13.65□□□□□ -0.22
CCDC40-209ENST00000573474 IL26Q9NPH9 171 aa13.65□□□□□ -0.22
CCDC40-209ENST00000573474 FBXO6Q9NRD1 293 aaPredicted RBP13.65□□□□□ -0.22
CCDC40-209ENST00000573474 INTS10Q9NVR2 710 aaKnown RBP13.65□□□□□ -0.22
CCDC40-209ENST00000573474 WNT16Q9UBV4 365 aa13.65□□□□□ -0.22
CCDC40-209ENST00000573474 MTO1Q9Y2Z2 717 aaKnown RBP13.65□□□□□ -0.22
CCDC40-209ENST00000573474 MYO10Q9HD67 2058 aa13.65□□□□□ -0.22
CCDC40-209ENST00000573474 GLYATL1P3A0A0U1RQE8 302 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 A0A1W2PQF6 199 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 H0Y858 1186 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 PSMD11O00231 422 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 AREL1O15033 823 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 MID1O15344 667 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 RFPL1O75677 317 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 SRP72O76094 671 aaKnown RBP13.64□□□□□ -0.23
CCDC40-209ENST00000573474 HAUS5O94927 633 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 BRAFP15056 766 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 KRT4P19013 534 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 ITGALP20701 1170 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 CD72P21854 359 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 PPARGP37231 505 aaPredicted RBP13.64□□□□□ -0.23
CCDC40-209ENST00000573474 P2RY2P41231 377 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 CLCN5P51795 746 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 COPAP53621 1224 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 CNTN1Q12860 1018 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 RALGDSQ12967 914 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 TYSND1Q2T9J0 566 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 TMEM52BQ4KMG9 183 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 LYPLAL1Q5VWZ2 237 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 KIAA1211LQ6NV74 962 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 FAM151BQ6UXP7 276 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 LIPIQ6XZB0 460 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 KDM7AQ6ZMT4 941 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 SNX20Q7Z614 316 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 SYNPOQ8N3V7 929 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 DCLK2Q8N568 766 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 RPLP0P6Q8NHW5 317 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 ACMSDQ8TDX5 336 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 SHDQ96IW2 340 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 SERAC1Q96JX3 654 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 PLEKHG4BQ96PX9 1271 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 GPR22Q99680 433 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 CDH19Q9H159 772 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 SSU72Q9NP77 194 aaKnown RBP13.64□□□□□ -0.23
CCDC40-209ENST00000573474 ARHGEF3Q9NR81 526 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 CA14Q9ULX7 337 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 NDRG2Q9UN36 371 aaKnown RBP13.64□□□□□ -0.23
CCDC40-209ENST00000573474 VPS9D1Q9Y2B5 631 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 FNDC3AQ9Y2H6 1198 aaKnown RBP13.64□□□□□ -0.23
CCDC40-209ENST00000573474 MRPS17Q9Y2R5 130 aaKnown RBP13.64□□□□□ -0.23
CCDC40-209ENST00000573474 F5P12259 2224 aa13.64□□□□□ -0.23
CCDC40-209ENST00000573474 TCF20Q9UGU0 1960 aaKnown RBP13.63□□□□□ -0.23
CCDC40-209ENST00000573474 PLK4O00444 970 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 NEMP1O14524 444 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 GAPDHSO14556 408 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-209ENST00000573474 SPINT1O43278 529 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 NDUFS3O75489 264 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 PRAMEF1O95521 474 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 F7P08709 466 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-209ENST00000573474 ELFN1P0C7U0 828 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 PYGBP11216 843 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 CREB1P16220 341 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 COL9A1P20849 921 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 TTPAP49638 278 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 SERPINB8P50452 374 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 DCDC1P59894 354 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 SLC18A2Q05940 514 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 SEMA3AQ14563 771 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 CHRNA6Q15825 494 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 GPR33Q49SQ1 333 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 PIP5KL1Q5T9C9 394 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 RNF187Q5TA31 235 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-209ENST00000573474 CNSTQ6PJW8 725 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 CERS6Q6ZMG9 384 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 SH2D5Q6ZV89 423 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 TAS2R42Q7RTR8 314 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 HSD11B1LQ7Z5J1 315 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 LDB1Q86U70 411 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-209ENST00000573474 PIANPQ8IYJ0 282 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 NRSN1Q8IZ57 195 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 C4orf33Q8N1A6 199 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 GPR26Q8NDV2 337 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 ZNF398Q8TD17 642 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 DTX3LQ8TDB6 740 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 ISL2Q96A47 359 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 ATXN7L3BQ96GX2 97 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 TTC1Q99614 292 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 SELENOSQ9BQE4 189 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 FAM83DQ9H4H8 585 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 FAM96AQ9H5X1 160 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 ASB8Q9H765 288 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 CNOT10Q9H9A5 744 aaKnown RBP13.63□□□□□ -0.23
CCDC40-209ENST00000573474 CD248Q9HCU0 757 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 KCNK9Q9NPC2 374 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 NFKBIL1Q9UBC1 381 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-209ENST00000573474 FBXL21Q9UKT6 434 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 CORO1CQ9ULV4 474 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-209ENST00000573474 MMP17Q9ULZ9 603 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 SCML1Q9UN30 329 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 SMG5Q9UPR3 1016 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms