RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RCOR2Q8IZ40 523 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 RBFAQ8N0V3 343 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 SDR16C5Q8N3Y7 309 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 FAM181AQ8N9Y4 354 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 SPC24Q8NBT2 197 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 LPCAT1Q8NF37 534 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 OR56A4Q8NGH8 313 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 EXD1Q8NHP7 514 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CCHCR1Q8TD31 782 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 LRRN4Q8WUT4 740 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 TFB1MQ8WVM0 346 aaKnown RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 PIH1D2Q8WWB5 315 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 P3H4Q92791 437 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 DTD2Q96FN9 168 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 APOLD1Q96LR9 279 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 COQ10AQ96MF6 247 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 NSMCE3Q96MG7 304 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 LRRC61Q9BV99 259 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 ADGRE3Q9BY15 652 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 ABCG4Q9H172 646 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 PCDH9Q9HC56 1237 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 MOSPD1Q9UJG1 213 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 SALL4Q9UJQ4 1053 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 RPL26L1Q9UNX3 145 aaKnown RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 TFR2Q9UP52 801 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CHKBQ9Y259 395 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 ASXL3Q9C0F0 2248 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 MACROD2A1Z1Q3 448 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 CCDC66A2RUB6 948 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 NPIPB15A6NHN6 443 aaPredicted RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 BTNL10A8MVZ5 291 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 LMO7DNF2Z398 122 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 FZD6O60353 706 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 GP1BAP07359 652 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 PDHA1P08559 390 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 HOXC4P09017 264 aaPredicted RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 MYCLP1P12525 358 aaPredicted RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 LHCGRP22888 699 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 CTNNA2P26232 953 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 ETV3P41162 512 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 GPR1P46091 355 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 SRP54P61011 504 aaKnown RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 ZBTB17Q13105 803 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 C1orf61Q13536 156 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 NR0B2Q15466 257 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 PPP2R5EQ16537 467 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 ALG11Q2TAA5 492 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 HES3Q5TGS1 186 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 LRRC66Q68CR7 880 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 LVRNQ6Q4G3 990 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 C19orf48Q6RUI8 117 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 RAD9BQ6WBX8 426 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 HSD11B1LQ7Z5J1 315 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 PDZD3Q86UT5 571 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 NT5DC3Q86UY8 548 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 RAVER1Q8IY67 606 aaKnown RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 SYCE1Q8N0S2 351 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 PLA2G15Q8NCC3 412 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 ACRBPQ8NEB7 543 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 ARRDC2Q8TBH0 407 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 IFI44Q8TCB0 444 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 KIAA1524Q8TCG1 905 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 MAPK15Q8TD08 544 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 NAT6Q93015 286 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 TSACCQ96A04 125 aaPredicted RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 COL26A1Q96A83 441 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 FUBP1Q96AE4 644 aaKnown RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 AP2M1Q96CW1 435 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 NXPE2Q96DL1 559 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 AGAP3Q96P47 875 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 OLFM3Q96PB7 478 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 MLPHQ9BV36 600 aaPredicted RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 SLC25A51Q9H1U9 297 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 TCEAL2Q9H3H9 227 aaPredicted RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 GOLPH3Q9H4A6 298 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 CCDC86Q9H6F5 360 aaKnown RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 PKD2L2Q9NZM6 624 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 KLHL8Q9P2G9 620 aaPredicted RBP8.09□□□□□ -1.11
VPS53-214ENST00000572607 KLF15Q9UIH9 416 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 CLCA2Q9UQC9 943 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 PPIL1Q9Y3C6 166 aa8.09□□□□□ -1.11
VPS53-214ENST00000572607 TMEM131Q92545 1883 aa8.09□□□□□ -1.12
VPS53-214ENST00000572607 COL5A1P20908 1838 aaPredicted RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 TP53BP1Q12888 1972 aaPredicted RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 TENM4Q6N022 2769 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CFAP46Q8IYW2 2715 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 hCG_1818297A0A087WSY0 165 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 C1orf232A0A0U1RR37 186 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CPED1A4D0V7 1026 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 FAM149AA5PLN7 773 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 TMEM202A6NGA9 273 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 HACD1B0YJ81 288 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 TNFRSF10CO14798 259 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 YY2O15391 372 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 NRDCO43847 1150 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 ZNF189O75820 626 aaPredicted RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 STK10O94804 968 aaKnown RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 GIMD1P0DJR0 217 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 TEAD1P28347 426 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CTNNA1P35221 906 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms