RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 RAET1GQ6H3X3 334 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 ZNF438Q7Z4V0 828 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 SLITRK4Q8IW52 837 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 FBXO39Q8N4B4 442 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 ARL14Q8N4G2 192 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 OR6C4Q8NGE1 309 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 EID2BQ96D98 161 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 TDRD1Q9BXT4 1180 aaKnown RBP18.05■□□□□ 0.48
CHD3-214ENST00000572579 POLR1EQ9GZS1 481 aaKnown RBP18.05■□□□□ 0.48
CHD3-214ENST00000572579 TRNAU1APQ9NX07 287 aaKnown RBP18.05■□□□□ 0.48
CHD3-214ENST00000572579 DTLQ9NZJ0 730 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 UVRAGQ9P2Y5 699 aa18.05■□□□□ 0.48
CHD3-214ENST00000572579 GCN1Q92616 2671 aaKnown RBP18.05■□□□□ 0.48
CHD3-214ENST00000572579 PDE2AO00408 941 aaPredicted RBP18.04■□□□□ 0.48
CHD3-214ENST00000572579 PPM1DO15297 605 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 CLDN7O95471 211 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 IVLP07476 585 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 H2AFZP0C0S5 128 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 KDELR1P24390 212 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 TMPRSS3P57727 454 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 CFHR1Q03591 330 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 DOK6Q6PKX4 331 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 SLC30A9Q6PML9 568 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 ADAMTSL4Q6UY14 1074 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 USP45Q70EL2 814 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 H2AFVQ71UI9 128 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 NAGSQ8N159 534 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 ZNF843Q8N446 348 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 PLD5Q8N7P1 536 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 OR8K1Q8NGG5 319 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 ZDHHC1Q8WTX9 485 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 TTC9Q92623 222 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 COX14Q96I36 57 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 RNF157Q96PX1 679 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 NUDT22Q9BRQ3 303 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 SEMA4CQ9C0C4 833 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 RDH14Q9HBH5 336 aa18.04■□□□□ 0.48
CHD3-214ENST00000572579 HELZ2Q9BYK8 2649 aaKnown RBP18.04■□□□□ 0.48
CHD3-214ENST00000572579 UNC13CQ8NB66 2214 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 SHROOM3Q8TF72 1996 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 GOLGA6CA6NDK9 693 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 GOLGA6BA6NDN3 693 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 K7ENP7 123 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 KCNK1O00180 336 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 EML2O95834 649 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 JCHAINP01591 159 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 GOLGA6DP0CG33 693 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 CD1CP29017 333 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 MLLT3P42568 568 aaPredicted RBP18.03■□□□□ 0.48
CHD3-214ENST00000572579 GPR1P46091 355 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 VAC14Q08AM6 782 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 ZBTB17Q13105 803 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 ARHGEF7Q14155 803 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 NR1D2Q14995 579 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 IFI16Q16666 785 aaKnown RBP18.03■□□□□ 0.48
CHD3-214ENST00000572579 PYCR3Q53H96 274 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 INO80CQ6PI98 192 aaPredicted RBP18.03■□□□□ 0.48
CHD3-214ENST00000572579 USP53Q70EK8 1073 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 NLRP8Q86W28 1048 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 LSM14AQ8ND56 463 aaKnown RBP18.03■□□□□ 0.48
CHD3-214ENST00000572579 SLC35G2Q8TBE7 412 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 AP2M1Q96CW1 435 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 RIOK2Q9BVS4 552 aaKnown RBP18.03■□□□□ 0.48
CHD3-214ENST00000572579 GSDMCQ9BYG8 508 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 KCTD5Q9NXV2 234 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 GOLGA6AQ9NYA3 693 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 PISDQ9UG56 409 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 LOXL2Q9Y4K0 774 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 PCDHGA7Q9Y5G6 932 aa18.03■□□□□ 0.48
CHD3-214ENST00000572579 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.03■□□□□ 0.488e-8■■■■□ 19.6
CHD3-214ENST00000572579 OAS3Q9Y6K5 1087 aaKnown RBP18.03■□□□□ 0.48
CHD3-214ENST00000572579 ARHGEF17Q96PE2 2063 aaPredicted RBP18.03■□□□□ 0.48
CHD3-214ENST00000572579 CAPN8A6NHC0 703 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 TMEM253P0C7T8 217 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 MAN1A1P33908 653 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 MESDQ14696 234 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 C16orf72Q14CZ0 275 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 QPCTQ16769 361 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 TSR1Q2NL82 804 aaKnown RBP18.02■□□□□ 0.48
CHD3-214ENST00000572579 BROXQ5VW32 411 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 NKAIN2Q5VXU1 208 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 B4GALNT4Q76KP1 1039 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 HDAC11Q96DB2 347 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 TMEM74Q96NL1 305 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 LYSMD1Q96S90 227 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 BRD8Q9H0E9 1235 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 SPTLC3Q9NUV7 552 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 FOXJ2Q9P0K8 574 aa18.02■□□□□ 0.48
CHD3-214ENST00000572579 SSU72P8A0A1W2PR75 194 aa18.01■□□□□ 0.47
CHD3-214ENST00000572579 EIF4E1BA6NMX2 242 aaKnown RBP18.01■□□□□ 0.47
CHD3-214ENST00000572579 TMX2-CTNND1H3BSU7 103 aa18.01■□□□□ 0.47
CHD3-214ENST00000572579 KRT7P08729 469 aa18.01■□□□□ 0.47
CHD3-214ENST00000572579 ALDH4A1P30038 563 aa18.01■□□□□ 0.47
CHD3-214ENST00000572579 ARSDP51689 593 aa18.01■□□□□ 0.47
CHD3-214ENST00000572579 UCNP55089 124 aa18.01■□□□□ 0.47
CHD3-214ENST00000572579 PPIDQ08752 370 aaKnown RBP18.01■□□□□ 0.47
CHD3-214ENST00000572579 ILF3Q12906 894 aaKnown RBP eCLIP18.01■□□□□ 0.47
CHD3-214ENST00000572579 EIF3IQ13347 325 aaKnown RBP18.01■□□□□ 0.47
CHD3-214ENST00000572579 AMZ1Q400G9 498 aa18.01■□□□□ 0.47
CHD3-214ENST00000572579 KIAA1614Q5VZ46 1190 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms