RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CLDN2P57739 230 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 SESN2P58004 480 aaPredicted RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 PFN3P60673 137 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 GUCY2DQ02846 1103 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 CCDC15Q0P6D6 951 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 ACOX1Q15067 660 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 LPAL2Q16609 132 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 KHDC1Q4VXA5 237 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 GLE1Q53GS7 698 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 PLA2G2CQ5R387 149 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 DENND2CQ68D51 928 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 ESRP1Q6NXG1 681 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 LPCAT2Q7L5N7 544 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 GLT6D1Q7Z4J2 308 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 TMEM135Q86UB9 458 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 C11orf74Q86VG3 221 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 SPATS2Q86XZ4 545 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 DENND6BQ8NEG7 585 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 DTX3LQ8TDB6 740 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 CXorf40AQ8TE69 158 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 DNAJC1Q96KC8 554 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 MYOCQ99972 504 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 RIOK2Q9BVS4 552 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 LGR4Q9BXB1 951 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 SUDS3Q9H7L9 328 aaPredicted RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 XAB2Q9HCS7 855 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 TM9SF3Q9HD45 589 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 BPIFA1Q9NP55 256 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 CHRAC1Q9NRG0 131 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 NLE1Q9NVX2 485 aaPredicted RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 FKBPLQ9UIM3 349 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 RIMKLBQ9ULI2 386 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 SOX13Q9UN79 622 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 SMG5Q9UPR3 1016 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 TCAF1Q9Y4C2 921 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 PCYT1BQ9Y5K3 369 aaPredicted RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 TEX264Q9Y6I9 313 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 SPEGQ15772 3267 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 TRBV5-4A0A0C4DH59 114 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 CCDC78A2IDD5 438 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 RGSL1A5PLK6 1076 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 GOLGA6CA6NDK9 693 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 GOLGA6BA6NDN3 693 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 PATE3B3GLJ2 98 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 NEMP1O14524 444 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 NDUFS2O75306 463 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 PPFIA2O75334 1257 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 GOLGA6DP0CG33 693 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 LPOP22079 712 aaPredicted RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 HNRNPA2B1P22626 353 aaKnown RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 ADRA1DP25100 572 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 TEAD1P28347 426 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 NPY2RP49146 381 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 DHPSP49366 369 aaPredicted RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 CDKN1CP49918 316 aaPredicted RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 NHLH1Q02575 133 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 DHX9Q08211 1270 aaKnown RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 SEMA3AQ14563 771 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 NAA30Q147X3 362 aaPredicted RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 SETMARQ53H47 684 aaPredicted RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 PCID2Q5JVF3 399 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 TSTD2Q5T7W7 516 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 LYSMD4Q5XG99 296 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 STEAP4Q687X5 459 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 CES3Q6UWW8 571 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 XKR5Q6UX68 686 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 PPP1R21Q6ZMI0 780 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 PIANPQ8IYJ0 282 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 NRSN1Q8IZ57 195 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 UNC5BQ8IZJ1 945 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 ZCCHC9Q8N567 271 aaKnown RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 OR13H1Q8NG92 308 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 OR4K2Q8NGD2 314 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 FOXJ1Q92949 421 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 NUS1Q96E22 293 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 MFSD3Q96ES6 412 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 CDKN2AIPNLQ96HQ2 116 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 COX14Q96I36 57 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 TBATAQ96M53 351 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 PLEKHG4BQ96PX9 1271 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 SRPK1Q96SB4 655 aaKnown RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 TEX101Q9BY14 249 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 GPR63Q9BZJ6 419 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 IL22Q9GZX6 179 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 RAB17Q9H0T7 212 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 SMOC1Q9H4F8 434 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 MRM3Q9HC36 420 aaKnown RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 CAPN10Q9HC96 672 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 EPB41L5Q9HCM4 733 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 GOLGA6AQ9NYA3 693 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 ANAPC5Q9UJX4 755 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 DMTF1Q9Y222 760 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 FNDC3AQ9Y2H6 1198 aaKnown RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 HS3ST3A1Q9Y663 406 aa9.25□□□□□ -0.93
VPS35-211ENST00000569950 PTPRZ1P23471 2315 aaPredicted RBP9.25□□□□□ -0.93
VPS35-211ENST00000569950 GOLGA4Q13439 2230 aaKnown RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 FAM237BA0A1B0GVD1 139 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 CCDC162PA2VCL2 907 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 OR51F1A6NGY5 319 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 PRAMEF26H0Y7S4 382 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms