RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 A0A0J9YYE9 177 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 MATN3O15232 486 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 B4GAT1O43505 415 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 MFSD11O43934 449 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 ECEL1O95672 775 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 TRBC1P01850 177 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 PDHA1P08559 390 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 CD48P09326 243 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 LIPCP11150 499 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 PLA2G2AP14555 144 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 ADCY8P40145 1251 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 ARSEP51690 589 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 EPHB1P54762 984 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 MAZP56270 477 aaKnown RBP18.66■□□□□ 0.58
CLN3-218ENST00000565688 CTBSQ01459 385 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 DPYSL3Q14195 570 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 PDK2Q15119 407 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 IFI16Q16666 785 aaKnown RBP18.66■□□□□ 0.58
CLN3-218ENST00000565688 LRRC66Q68CR7 880 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 SLC30A9Q6PML9 568 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 LUZP1Q86V48 1076 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 MAP7D3Q8IWC1 876 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 RAVER1Q8IY67 606 aaKnown RBP18.66■□□□□ 0.58
CLN3-218ENST00000565688 KCTD6Q8NC69 237 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 ZNF564Q8TBZ8 553 aaPredicted RBP18.66■□□□□ 0.58
CLN3-218ENST00000565688 MAML1Q92585 1016 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 AP2M1Q96CW1 435 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 SCARF2Q96GP6 870 aaPredicted RBP18.66■□□□□ 0.58
CLN3-218ENST00000565688 TSGA13Q96PP4 275 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 ZNF670Q9BS34 389 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 B3GNT4Q9C0J1 378 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 WDR70Q9NW82 654 aa18.66■□□□□ 0.58
CLN3-218ENST00000565688 ARHGEF17Q96PE2 2063 aaPredicted RBP18.65■□□□□ 0.58
CLN3-218ENST00000565688 COL6A6A6NMZ7 2263 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 GOLGA6L19H0YKK7 550 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 ITIH1P19827 911 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 CCNCP24863 283 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 AK4P27144 223 aaPredicted RBP18.65■□□□□ 0.58
CLN3-218ENST00000565688 CD82P27701 267 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 ALDH4A1P30038 563 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 POLD2P49005 469 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 OR1D5P58170 312 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 RPL26P61254 145 aaKnown RBP18.65■□□□□ 0.58
CLN3-218ENST00000565688 PTPRRQ15256 657 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 AMZ1Q400G9 498 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 ANKRD20A8PQ5CZ79 823 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 TMEM164Q5U3C3 297 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 NCBP2-AS2Q69YL0 99 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 TMPRSS9Q7Z410 1059 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 NRSN1Q8IZ57 195 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 MED8Q96G25 268 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 ABCG8Q9H221 673 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 SEMA6CQ9H3T2 930 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 UVRAGQ9P2Y5 699 aa18.65■□□□□ 0.58
CLN3-218ENST00000565688 RPL26L1Q9UNX3 145 aaKnown RBP18.65■□□□□ 0.58
CLN3-218ENST00000565688 FLNBO75369 2602 aaKnown RBP18.65■□□□□ 0.58
CLN3-218ENST00000565688 PRAMEF33A0A0G2JMD5 474 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 SYCE3A1L190 88 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 HGSO14964 777 aaPredicted RBP18.64■□□□□ 0.57
CLN3-218ENST00000565688 PRAMEF10O60809 474 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 SOD1P00441 154 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 KRT7P08729 469 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 MX2P20592 715 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 PTSQ03393 145 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 LRP8Q14114 963 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 LY6DQ14210 128 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 KIAA1614Q5VZ46 1190 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 DOK6Q6PKX4 331 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 PTCD2Q8WV60 388 aaKnown RBP18.64■□□□□ 0.57
CLN3-218ENST00000565688 OR2M4Q96R27 311 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 RDH14Q9HBH5 336 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 RBM22Q9NW64 420 aaKnown RBP eCLIP18.64■□□□□ 0.57
CLN3-218ENST00000565688 CTTNBP2NLQ9P2B4 639 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 CD84Q9UIB8 345 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 PCDHB11Q9Y5F2 797 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 SCN8AQ9UQD0 1980 aa18.64■□□□□ 0.57
CLN3-218ENST00000565688 ASH1LQ9NR48 2969 aaKnown RBP18.63■□□□□ 0.57
CLN3-218ENST00000565688 EFSO43281 561 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 PROSCO94903 275 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 GYPCP04921 128 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 CD1CP29017 333 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 GJC1P36383 396 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 ACTR1BP42025 376 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 STC1P52823 247 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 MAPK10P53779 464 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 ACTR1AP61163 376 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 DSC2Q02487 901 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 TRA2AQ13595 282 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLN3-218ENST00000565688 USP53Q70EK8 1073 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 NAGSQ8N159 534 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 EXD1Q8NHP7 514 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 USP7Q93009 1102 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 SCAMP4Q969E2 229 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 SGF29Q96ES7 293 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 DPYSL5Q9BPU6 564 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 TDRD1Q9BXT4 1180 aaKnown RBP18.63■□□□□ 0.57
CLN3-218ENST00000565688 TMEM98Q9Y2Y6 226 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 TTLL3Q9Y4R7 772 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 ST14Q9Y5Y6 855 aa18.63■□□□□ 0.57
CLN3-218ENST00000565688 A0A0U1RQS6 177 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms