RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PARP6Q2NL67 630 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 HS1BP3Q53T59 392 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 LRRC66Q68CR7 880 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 DRICH1Q6PGQ1 229 aaPredicted RBP17.24■□□□□ 0.35
CLN3-217ENST00000565354 KDELC1Q6UW63 502 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 LRRC69Q6ZNQ3 347 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 TSPAN33Q86UF1 283 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 TAB3Q8N5C8 712 aaPredicted RBP17.24■□□□□ 0.35
CLN3-217ENST00000565354 CCHCR1Q8TD31 782 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 ACTRT1Q8TDG2 376 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 MAGOHBQ96A72 148 aaKnown RBP17.24■□□□□ 0.35
CLN3-217ENST00000565354 TADA1Q96BN2 335 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 CAPZA3Q96KX2 299 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 SRPK1Q96SB4 655 aaKnown RBP17.24■□□□□ 0.35
CLN3-217ENST00000565354 FICDQ9BVA6 458 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 AP1M1Q9BXS5 423 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 KCTD5Q9NXV2 234 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 TTC7AQ9ULT0 858 aaPredicted RBP17.24■□□□□ 0.35
CLN3-217ENST00000565354 DRG1Q9Y295 367 aaKnown RBP17.24■□□□□ 0.35
CLN3-217ENST00000565354 PCDHGA1Q9Y5H4 931 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 ATMQ13315 3056 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 PSMD11O00231 422 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 WNT9AO14904 365 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 RAD51BO15315 384 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 TLX3O43711 291 aaPredicted RBP17.23■□□□□ 0.35
CLN3-217ENST00000565354 SLC4A1P02730 911 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 PCCBP05166 539 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 THEGLP0DJG4 465 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 JUPP14923 745 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 HLA-DPA1P20036 260 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 LHCGRP22888 699 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 KCNJ1P48048 391 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 IL9RQ01113 521 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 OVGP1Q12889 678 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 PTPRRQ15256 657 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 PAPD7Q5XG87 772 aaKnown RBP17.23■□□□□ 0.35
CLN3-217ENST00000565354 CRTC1Q6UUV9 634 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 GCNT7Q6ZNI0 430 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 IQCHQ86VS3 1027 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 PRELID2Q8N945 189 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 TMEM145Q8NBT3 493 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 RTP4Q96DX8 246 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 NUS1Q96E22 293 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 MRGPRX2Q96LB1 330 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 SMIM14Q96QK8 99 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 TRIB3Q96RU7 358 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 GPR63Q9BZJ6 419 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 GDF3Q9NR23 364 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 SMARCAL1Q9NZC9 954 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 PAK5Q9P286 719 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 COL6A6A6NMZ7 2263 aa17.23■□□□□ 0.35
CLN3-217ENST00000565354 A0A1W2PR77 199 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 E7EVH7 732 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 TLR4O00206 839 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 PSMD3O43242 534 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 EPOP01588 193 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 WNT1P04628 370 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 FGF1P05230 155 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 PIRTP0C851 137 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 FDFT1P37268 417 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 PAFAH1B1P43034 410 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 RABIFP47224 123 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 IRF4Q15306 451 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 FAXCQ5TGI0 409 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 SYT10Q6XYQ8 523 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 KYAT3Q6YP21 454 aaKnown RBP17.22■□□□□ 0.35
CLN3-217ENST00000565354 ZNF605Q86T29 641 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 TP53I13Q8NBR0 393 aaPredicted RBP17.22■□□□□ 0.35
CLN3-217ENST00000565354 FCRL3Q96P31 734 aaPredicted RBP17.22■□□□□ 0.35
CLN3-217ENST00000565354 LYSMD1Q96S90 227 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 PKD2L2Q9NZM6 624 aa17.22■□□□□ 0.35
CLN3-217ENST00000565354 ARID1BQ8NFD5 2236 aaPredicted RBP17.22■□□□□ 0.35
CLN3-217ENST00000565354 MYO18BQ8IUG5 2567 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 A0A1B0GTQ1 180 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 LOC285095A0A1B0GVY8 99 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 POM121BA6NF01 834 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 RRP8O43159 456 aaKnown RBP17.21■□□□□ 0.35
CLN3-217ENST00000565354 CLDN7O95471 211 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 METTL18O95568 372 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 AGTP01019 485 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 C1SP09871 688 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 CDK4P11802 303 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 ETS1P14921 441 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 IGFALSP35858 605 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 ETV3P41162 512 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 THOP1P52888 689 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 ETF1P62495 437 aaKnown RBP17.21■□□□□ 0.35
CLN3-217ENST00000565354 AGERQ15109 404 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 SLC1A5Q15758 541 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 WSCD2Q2TBF2 565 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 SIRPB2Q5JXA9 342 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 Q6ZSR6 202 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 HSD11B1LQ7Z5J1 315 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 DCP2Q8IU60 420 aaKnown RBP17.21■□□□□ 0.35
CLN3-217ENST00000565354 ZNF843Q8N446 348 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 OR13H1Q8NG92 308 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 ATL2Q8NHH9 583 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 BLOC1S5Q8TDH9 187 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 CENPTQ96BT3 561 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 BMFQ96LC9 184 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms