RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CAVIN1Q6NZI2 390 aaKnown RBP17.06■□□□□ 0.32
CLN3-216ENST00000565316 ZNF574Q6ZN55 896 aaPredicted RBP17.06■□□□□ 0.32
CLN3-216ENST00000565316 RFLNAQ6ZTI6 216 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 ZNF765Q7L2R6 523 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 PIM3Q86V86 326 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 DTX1Q86Y01 620 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 NDUFAF2Q8N183 169 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 POLR1EQ9GZS1 481 aaKnown RBP17.06■□□□□ 0.32
CLN3-216ENST00000565316 ABCG8Q9H221 673 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 FOXJ2Q9P0K8 574 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 BOD1L1Q8NFC6 3051 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 A0A0J9YYE9 177 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 A0A0U1RQS6 177 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 B8ZZF3 427 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 C9orf172C9J069 976 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.05■□□□□ 0.32
CLN3-216ENST00000565316 MYO1FO00160 1098 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 HGSO14964 777 aaPredicted RBP17.05■□□□□ 0.32
CLN3-216ENST00000565316 MATN3O15232 486 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 ZW10O43264 779 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 MFSD11O43934 449 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 TRBC1P01850 177 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 ZNF30P17039 623 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 CD82P27701 267 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 CD1CP29017 333 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 ALDH4A1P30038 563 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 GPR1P46091 355 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 ZBED6P86452 979 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 FANCCQ00597 558 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 DPYSL3Q14195 570 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 PAFAH1B3Q15102 231 aaKnown RBP17.05■□□□□ 0.32
CLN3-216ENST00000565316 AMZ1Q400G9 498 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 MAP9Q49MG5 647 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 LRRC66Q68CR7 880 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 SLC30A9Q6PML9 568 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 RAVER1Q8IY67 606 aaKnown RBP17.05■□□□□ 0.32
CLN3-216ENST00000565316 NAGSQ8N159 534 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 USP7Q93009 1102 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 AP2M1Q96CW1 435 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 IQCDQ96DY2 449 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 SGF29Q96ES7 293 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 TSGA13Q96PP4 275 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 SMIM14Q96QK8 99 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 NUDT22Q9BRQ3 303 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 SUDS3Q9H7L9 328 aaPredicted RBP17.05■□□□□ 0.32
CLN3-216ENST00000565316 RDH14Q9HBH5 336 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 AMACRQ9UHK6 382 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 CAPN11Q9UMQ6 739 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 NENFQ9UMX5 172 aa17.05■□□□□ 0.32
CLN3-216ENST00000565316 IGHV5-10-1A0A0J9YXX1 117 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 GOLGA6CA6NDK9 693 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 GOLGA6BA6NDN3 693 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 J3QKU1 62 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 PYGLP06737 847 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 GOLGA6DP0CG33 693 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 STC1P52823 247 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 SRSF6Q13247 344 aaKnown RBP17.04■□□□□ 0.32
CLN3-216ENST00000565316 HADHQ16836 314 aaKnown RBP17.04■□□□□ 0.32
CLN3-216ENST00000565316 NCBP2-AS2Q69YL0 99 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 ALKBH5Q6P6C2 394 aaKnown RBP17.04■□□□□ 0.32
CLN3-216ENST00000565316 XKR5Q6UX68 686 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 USP53Q70EK8 1073 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 ZFAND4Q86XD8 727 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 PATE1Q8WXA2 126 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 SCAMP4Q969E2 229 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 COX14Q96I36 57 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 CDH19Q9H159 772 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 GOLGA6AQ9NYA3 693 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 AKAP7Q9P0M2 348 aaPredicted RBP17.04■□□□□ 0.32
CLN3-216ENST00000565316 SEPT10Q9P0V9 454 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 PLEKHM1Q9Y4G2 1056 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 SPTA1P02549 2419 aa17.04■□□□□ 0.32
CLN3-216ENST00000565316 MYO18BQ8IUG5 2567 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 PPM1DO15297 605 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 PRLP01236 227 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 ITGB2P05107 769 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 CCNCP24863 283 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 MAPK10P53779 464 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 ITKQ08881 620 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 TRA2AQ13595 282 aaKnown RBP eCLIP17.03■□□□□ 0.32
CLN3-216ENST00000565316 LINC00303Q3SY05 128 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 ATP13A4Q4VNC1 1196 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 PYCR3Q53H96 274 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 ANKRD20A8PQ5CZ79 823 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 CCDC122Q5T0U0 273 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 TIGD7Q6NT04 549 aaPredicted RBP17.03■□□□□ 0.32
CLN3-216ENST00000565316 DOK6Q6PKX4 331 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 NRSN1Q8IZ57 195 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 EXD3Q8N9H8 876 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 OR4D9Q8NGE8 314 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 ARRDC2Q8TBH0 407 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 FAF2Q96CS3 445 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 OR2M4Q96R27 311 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 ZNF670Q9BS34 389 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 CBX8Q9HC52 389 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 RBM22Q9NW64 420 aaKnown RBP eCLIP17.03■□□□□ 0.32
CLN3-216ENST00000565316 CD84Q9UIB8 345 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 DNPEPQ9ULA0 475 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 TMEM98Q9Y2Y6 226 aa17.03■□□□□ 0.32
CLN3-216ENST00000565316 IGHV1OR21-1A0A087WYE8 117 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms