RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 TMC2Q8TDI7 906 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 MAFIPQ8WZ33 124 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 NPAS2Q99743 824 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 PKP2Q99959 881 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 AP4E1Q9UPM8 1137 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 BAZ2BQ9UIF8 2168 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 AKAP3O75969 853 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 EGFRP00533 1210 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CYP1A1P04798 512 aaPredicted RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 NCAM1P13591 858 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 KCNA5P22460 613 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 GNPDA1P46926 289 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 TPMTP51580 245 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 NKX2-5P52952 324 aaPredicted RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 EIF6P56537 245 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 CDC20Q12834 499 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CBLBQ13191 982 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 DUOXA2Q1HG44 320 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 LRRC47Q8N1G4 583 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 FIBCD1Q8N539 461 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 COPS4Q9BT78 406 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 DPAGT1Q9H3H5 408 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 RAVER2Q9HCJ3 691 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 ATP13A2Q9NQ11 1180 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 PRDM8Q9NQV8 689 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 PPP4R1LQ9P1A2 415 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 ENPP5Q9UJA9 477 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 ERVV-2B6SEH9 535 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 POLRMTO00411 1230 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 KLRC4O43908 158 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 PROS1P07225 676 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CYP2C8P10632 490 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 STAT3P40763 770 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 PEX3P56589 373 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 SMIM11AP58511 58 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CDKL1Q00532 357 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CHRNEQ04844 493 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CCNIQ14094 377 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 GPAT3Q53EU6 434 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 AHSA2Q719I0 299 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 SPATA19Q7Z5L4 167 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 FBXO33Q7Z6M2 555 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 NIM1KQ8IY84 436 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 RBFAQ8N0V3 343 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 DNAJB8Q8NHS0 232 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 ZNF496Q96IT1 587 aaPredicted RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 C17orf62Q9BQA9 187 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 LXNQ9BS40 222 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 TRIT1Q9H3H1 467 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 RBAKQ9NYW8 714 aaPredicted RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 PTPRJQ12913 1337 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 SOBPA7XYQ1 873 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 RNF225M0QZC1 329 aaPredicted RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 CCNDBP1O95273 360 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 SGPL1O95470 568 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 DNAJB1P25685 340 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 SPCS2Q15005 226 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 TMEM119Q4V9L6 283 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 SSX9Q7RTT3 188 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 BRSK1Q8TDC3 778 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CELF1Q92879 486 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 KAT5Q92993 513 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 THG1LQ9NWX6 298 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 ZNRF3Q9ULT6 936 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 RNF112Q9ULX5 631 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 M0QZ92 97 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 EEF2KO00418 725 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 APOC3P02656 99 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 ZDHHC11BP0C7U3 371 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CFL1P23528 166 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 PTPN7P35236 360 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 RBM34P42696 430 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 ZNF132P52740 706 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 ZNF470Q6ECI4 717 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 ZNF782Q6ZMW2 699 aaPredicted RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 TSPAN33Q86UF1 283 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 TMEM47Q9BQJ4 181 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 RPF1Q9H9Y2 349 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 SPON1Q9HCB6 807 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 CMAHPQ9Y471 501 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 TRAF6Q9Y4K3 522 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 L7N2F9 121 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 ADAMTS2O95450 1211 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 UBL4AP11441 157 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 DDOSTP39656 456 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 LIMK2P53671 638 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 PCID2Q5JVF3 399 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 RFPL4BQ6ZWI9 263 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 OR56A4Q8NGH8 313 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 ZNF578Q96N58 590 aaPredicted RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 SERPINB11Q96P15 392 aa6.25□□□□□ -1.41
CLK3-212ENST00000563418 NUSAP1Q9BXS6 441 aaKnown RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 FARP1Q9Y4F1 1045 aaPredicted RBP6.25□□□□□ -1.41
CLK3-212ENST00000563418 AGLP35573 1532 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 RGS13O14921 159 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 DHX15O43143 795 aaKnown RBP6.24□□□□□ -1.41
CLK3-212ENST00000563418 CHRNGP07510 517 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 MLNP12872 115 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 PAICSP22234 425 aaKnown RBP6.24□□□□□ -1.41
CLK3-212ENST00000563418 OPRL1P41146 370 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms