RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IL17CQ9P0M4 197 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 HEY2Q9UBP5 337 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 TAGLN3Q9UI15 199 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 GGT7Q9UJ14 662 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 EMCNQ9ULC0 261 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 PLA2G4CQ9UP65 541 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 CDYLQ9Y232 598 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ARL5AQ9Y689 179 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 OAS3Q9Y6K5 1087 aaKnown RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 DENND4CQ5VZ89 1909 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 GLYATL1P3A0A0U1RQE8 302 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 C1orf232A0A0U1RR37 186 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 CCDC195A0A1B0GUA6 201 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 UBA6A0AVT1 1052 aaPredicted RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 TSPAN11A1L157 253 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 CCDC162PA2VCL2 907 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TARM1B6A8C7 271 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 NEDD8-MDP1E9PL57 170 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 SPECC1L-ADORA2AF8WAN1 911 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 G3V2L1 256 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 MATN2O00339 956 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 MUSKO15146 869 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 GYG2O15488 501 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 SNX2O60749 519 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 AP2A2O94973 939 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 PRLP01236 227 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ENO2P09104 434 aaPredicted RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 CCDC166P0CW27 439 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ADH5P11766 374 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TYRP14679 529 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 NQO1P15559 274 aaKnown RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 IMPDH1P20839 514 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 DGKAP23743 735 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 MZF1P28698 734 aaPredicted RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 MC4RP32245 332 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 LIG3P49916 1009 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ATP4BP51164 291 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 COPAP53621 1224 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ERVFC1P60507 584 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ZNF33BQ06732 778 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 SFSWAPQ12872 951 aaKnown RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 TRAF2Q12933 501 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 SP140Q13342 867 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 NFATC2Q13469 925 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 CSHL1Q14406 222 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 HERC3Q15034 1050 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TEAD2Q15562 447 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ZRANB3Q5FWF4 1079 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 PTRHD1Q6GMV3 140 aaKnown RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 CGB2Q6NT52 195 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TMEM184AQ6ZMB5 413 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 MACC1Q6ZN28 852 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TPGS1Q6ZTW0 290 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ASRGL1Q7L266 308 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 KDELC2Q7Z4H8 507 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 MTDHQ86UE4 582 aaKnown RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 NRSN1Q8IZ57 195 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 FAM9CQ8IZT9 166 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 MYO1HQ8N1T3 1032 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 RYBPQ8N488 228 aaPredicted RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 TTC30BQ8N4P2 665 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 CPA6Q8N4T0 437 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS39-204ENST00000561818 PHC3Q8NDX5 983 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 CEP70Q8NHQ1 597 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 BPIFB1Q8TDL5 484 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 KCTD4Q8WVF5 259 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 RAB7BQ96AH8 199 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 RMDN2Q96LZ7 410 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 CYP2S1Q96SQ9 504 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 SERPINI1Q99574 410 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 HEPHQ9BQS7 1158 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TRIM56Q9BRZ2 755 aaKnown RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 ZSCAN5AQ9BUG6 496 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 C1QTNF3Q9BXJ4 246 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TRIM54Q9BYV2 358 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 MCOLN1Q9GZU1 580 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 MYLK2Q9H1R3 596 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 SUV39H2Q9H5I1 410 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TLE6Q9H808 572 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 ALG13Q9NP73 1137 aaKnown RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 TCF7L2Q9NQB0 619 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 FBXO6Q9NRD1 293 aaPredicted RBP7.49□□□□□ -1.21
VPS39-204ENST00000561818 LATS2Q9NRM7 1088 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 NUDT4Q9NZJ9 180 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 LMCD1Q9NZU5 365 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 SLC2A6Q9UGQ3 507 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 DCTN4Q9UJW0 460 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 FBXO10Q9UK96 956 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 PRDM4Q9UKN5 801 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 DNAJC16Q9Y2G8 782 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 HCFC2Q9Y5Z7 792 aa7.49□□□□□ -1.21
VPS39-204ENST00000561818 TRBV5-4A0A0C4DH59 114 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 DYTNA2CJ06 578 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 AGAP14A8MT82 685 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 TK2O00142 265 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 FCHO1O14526 889 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 RAD51BO15315 384 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms