RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	DOK2	O60496	412 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	GUCY1B2	O75343	617 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	FRAT2	O75474	233 aa	Predicted RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TGDS	O95455	350 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	PLAU	P00749	431 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ADRB2	P07550	413 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ATP1A3	P13637	1013 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	IGFBP2	P18065	325 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	IDUA	P35475	653 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	HNF4A	P41235	474 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	PAFAH1B1	P43034	410 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TUB	P50607	506 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ALDH3A2	P51648	485 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	VAMP2	P63027	116 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ARHGAP8	P85298	464 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	IL1RL1	Q01638	556 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	UBXN1	Q04323	297 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	DMWD	Q09019	674 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TBL3	Q12788	808 aa	Known RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TDG	Q13569	410 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	STIM1	Q13586	685 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	GALNT3	Q14435	633 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	NAA25	Q14CX7	972 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	SHROOM1	Q2M3G4	852 aa	Predicted RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	FKBP1C	Q5VVH2	108 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	GPR139	Q6DWJ6	353 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	CTR9	Q6PD62	1173 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	SLC30A9	Q6PML9	568 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	SLC22A25	Q6T423	547 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	RBM44	Q6ZP01	1051 aa	Known RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	BHLHA9	Q7RTU4	235 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TFAP2D	Q7Z6R9	452 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ADGRG3	Q86Y34	549 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	KLB	Q86Z14	1044 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	UNC45B	Q8IWX7	931 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ANKRD52	Q8NB46	1076 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	AVL9	Q8NBF6	648 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ZNF540	Q8NDQ6	660 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	SEMA6D	Q8NFY4	1073 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	GOT1L1	Q8NHS2	421 aa	Predicted RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	FBXO30	Q8TB52	745 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	NEK9	Q8TD19	979 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	HTRA1	Q92743	480 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	CLMN	Q96JQ2	1002 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TIGD1	Q96MW7	591 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ZNF396	Q96N95	335 aa	Predicted RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	CD180	Q99467	661 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TCHP	Q9BT92	498 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	HERC2P3	Q9BVR0	1158 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TM2D2	Q9BX73	214 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ARHGAP39	Q9C0H5	1083 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TMEM39B	Q9GZU3	492 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	CTDSP1	Q9GZU7	261 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	STN1	Q9H668	368 aa	Known RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	VEZT	Q9HBM0	779 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	GPR108	Q9NPR9	543 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	TCF7L2	Q9NQB0	619 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	DBNL	Q9UJU6	430 aa	Known RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	FBXO4	Q9UKT5	387 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	CFAP45	Q9UL16	551 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	DHDH	Q9UQ10	334 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	C2CD2	Q9Y426	696 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	AKAP11	Q9UKA4	1901 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	KAT6A	Q92794	2004 aa		4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	DDX60L	Q5H9U9	1706 aa	Known RBP	4.24	□□□□□ -1.73
LRRC28-222	ENST00000561431	MROH7-TTC4	A0A0A0MT08	1334 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	SIPA1L1	O43166	1804 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431		A0A1W2PPH5	198 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	NPIPB13	A6NJU9	1138 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	LINC01548	A6NM66	108 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	NPIPB5	A8MRT5	1133 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	TCP10L2	B9ZVM9	353 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	NPIPB4	C9JG80	1138 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	MCIDAS	D6RGH6	385 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431		H0Y626	953 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	SLC7A4	O43246	635 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	MTRF1	O75570	445 aa	Known RBP	4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	SURF6	O75683	361 aa	Known RBP	4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	SLC22A3	O75751	556 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	C1QL1	O75973	258 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	SNX4	O95219	450 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	IPO7	O95373	1038 aa	Known RBP	4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	SGPL1	O95470	568 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	METTL18	O95568	372 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	PRKCG	P05129	697 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	HNRNPA1	P09651	372 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	GZMA	P12544	262 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	TFEB	P19484	476 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	IL11	P20809	199 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	MPG	P29372	298 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	CIITA	P33076	1130 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	NF2	P35240	595 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	HOXD13	P35453	343 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	LIFR	P42702	1097 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	CPA2	P48052	419 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	CCR5	P51681	352 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	LBX1	P52954	281 aa		4.23	□□□□□ -1.73
LRRC28-222	ENST00000561431	ADPRH	P54922	357 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms