RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 LRRK1Q38SD2 2015 aa12.96□□□□□ -0.34
NEDD8-208ENST00000560427 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.95□□□□□ -0.34
NEDD8-208ENST00000560427 ZNF185O15231 689 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 RASGRP1O95267 797 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 GAS8O95995 478 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 TUBB4AP04350 444 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 CD59P13987 128 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 CASQ1P31415 396 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 RPL22P35268 128 aaKnown RBP12.95□□□□□ -0.34
NEDD8-208ENST00000560427 COILP38432 576 aaPredicted RBP12.95□□□□□ -0.34
NEDD8-208ENST00000560427 PAFAH1B1P43034 410 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 GRK6P43250 576 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 ID4P47928 161 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 LMAN1P49257 510 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 CDK3Q00526 305 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 CDK16Q00536 496 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 PPARDQ03181 441 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 CDH17Q12864 832 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 SHBQ15464 509 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 FAXCQ5TGI0 409 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 DENND5AQ6IQ26 1287 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 CCDC137Q6PK04 289 aaKnown RBP12.95□□□□□ -0.34
NEDD8-208ENST00000560427 PIP4P1Q86T03 277 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 HEATR4Q86WZ0 1026 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 CREG2Q8IUH2 290 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 NAXDQ8IW45 347 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 TTC30BQ8N4P2 665 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 TRAM1L1Q8N609 369 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 PDCD7Q8N8D1 485 aaKnown RBP12.95□□□□□ -0.34
NEDD8-208ENST00000560427 OR56A4Q8NGH8 313 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 SLCO2A1Q92959 643 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 FUBP1Q96AE4 644 aaKnown RBP12.95□□□□□ -0.34
NEDD8-208ENST00000560427 RIOK2Q9BVS4 552 aaKnown RBP12.95□□□□□ -0.34
NEDD8-208ENST00000560427 ETNK1Q9HBU6 452 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 DNAJC28Q9NX36 388 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 IL17CQ9P0M4 197 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 KLQ9UEF7 1012 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 CD84Q9UIB8 345 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 PKP3Q9Y446 797 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 DGKBQ9Y6T7 804 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 FRYLO94915 3013 aa12.95□□□□□ -0.34
NEDD8-208ENST00000560427 A0A0U1RQS6 177 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 NEMP2A6NFY4 417 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 CCDC188H7C350 402 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 K7ESM1 405 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 PIAS2O75928 621 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 ECEL1O95672 775 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 SOD1P00441 154 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 SLC4A1P02730 911 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 BPIP17213 487 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 SPAM1P38567 509 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 KCNJ1P48048 391 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 HK3P52790 923 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 EIF2B5Q13144 721 aaKnown RBP12.94□□□□□ -0.34
NEDD8-208ENST00000560427 LAMB3Q13751 1172 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 TPRG1LQ5T0D9 272 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 TTC27Q6P3X3 843 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 KDM7AQ6ZMT4 941 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 NYAP1Q6ZVC0 841 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 KANSL1Q7Z3B3 1105 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 PHACTR4Q8IZ21 702 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 C17orf53Q8N3J3 647 aaPredicted RBP12.94□□□□□ -0.34
NEDD8-208ENST00000560427 SDR16C5Q8N3Y7 309 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 FSTL5Q8N475 847 aaPredicted RBP12.94□□□□□ -0.34
NEDD8-208ENST00000560427 GLIS1Q8NBF1 620 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 SCAMP4Q969E2 229 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 HIC2Q96JB3 615 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 APOL2Q9BQE5 337 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 SLC13A1Q9BZW2 595 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 SMARCAL1Q9NZC9 954 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 SPASTQ9UBP0 616 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 APOBEC3BQ9UH17 382 aaKnown RBP12.94□□□□□ -0.34
NEDD8-208ENST00000560427 CSNK1G3Q9Y6M4 447 aa12.94□□□□□ -0.34
NEDD8-208ENST00000560427 TP53BP1Q12888 1972 aaPredicted RBP12.94□□□□□ -0.34
NEDD8-208ENST00000560427 DOCK9Q9BZ29 2069 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 GOLGA8CPA6NN73 597 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 KIF2AO00139 706 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-208ENST00000560427 AURKAO14965 403 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 FANCGO15287 622 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 STX7O15400 261 aaKnown RBP12.93□□□□□ -0.34
NEDD8-208ENST00000560427 USP12O75317 370 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 KRT14P02533 472 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 APRTP07741 180 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 ZSCAN5DPP0CG00 497 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 ALPPL2P10696 532 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 CEACAM1P13688 526 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 ETS1P14921 441 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 JUNDP17535 347 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 TPSB2P20231 275 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 LPOP22079 712 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-208ENST00000560427 HADHAP40939 763 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 MAGEA6P43360 314 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 SRP54P61011 504 aaKnown RBP12.93□□□□□ -0.34
NEDD8-208ENST00000560427 BASP1P80723 227 aaKnown RBP12.93□□□□□ -0.34
NEDD8-208ENST00000560427 MSLNQ13421 630 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-208ENST00000560427 TPSAB1Q15661 275 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 ALG11Q2TAA5 492 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 ARMC3Q5W041 872 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 ENPP7Q6UWV6 458 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 PPP1R21Q6ZMI0 780 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms