RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 CATSPER2Q96P56 530 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 TEFMQ96QE5 360 aaKnown RBP9.14□□□□□ -0.95
HDDC3-204ENST00000559834 OR2M4Q96R27 311 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 SLC38A3Q99624 504 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 MGME1Q9BQP7 344 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 EFHD1Q9BUP0 239 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 SLC12A9Q9BXP2 914 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 TRIM4Q9C037 500 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 ZMYND15Q9H091 742 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 LMBRD1Q9NUN5 540 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 HAUS2Q9NVX0 235 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 TUBD1Q9UJT1 453 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 DNPEPQ9ULA0 475 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 B3GALT1Q9Y5Z6 326 aa9.14□□□□□ -0.95
HDDC3-204ENST00000559834 NPIPB15A6NHN6 443 aaPredicted RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 EFCAB7A8K855 629 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ZNF891A8MT65 544 aaPredicted RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ATMINO43313 823 aaPredicted RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 MAFKO60675 156 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 LRCH4O75427 683 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 PEX11BO96011 259 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 THRAP10827 490 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ZNF30P17039 623 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 WT1P19544 449 aaPredicted RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 LHCGRP22888 699 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 MAP4P27816 1152 aaKnown RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 UGT1A3P35503 534 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 FASLGP48023 281 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 EPHB1P54762 984 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 NFKB2Q00653 900 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ITKQ08881 620 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 TRAF2Q12933 501 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 PIGHQ14442 188 aaPredicted RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ASIC2Q16515 512 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 DPYSL2Q16555 572 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 FILIP1LQ4L180 1135 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 PYCR3Q53H96 274 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 DOK6Q6PKX4 331 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ADAMTSL4Q6UY14 1074 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 CYP4V2Q6ZWL3 525 aaPredicted RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 POLNQ7Z5Q5 900 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 GALNT13Q8IUC8 556 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 TP53INP2Q8IXH6 220 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 RAVER1Q8IY67 606 aaKnown RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 NRSN1Q8IZ57 195 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 CACNA2D3Q8IZS8 1091 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 PGBD5Q8N414 524 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ATPAF2Q8N5M1 289 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 EXD1Q8NHP7 514 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 PATE1Q8WXA2 126 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 HTR3CQ8WXA8 447 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 KIAA1143Q96AT1 154 aaPredicted RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 SH3KBP1Q96B97 665 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ZNF653Q96CK0 615 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 MCCC1Q96RQ3 725 aaPredicted RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 ZPBPQ9BS86 351 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 SYT11Q9BT88 431 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 FUCA2Q9BTY2 467 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 NAT10Q9H0A0 1025 aaKnown RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 STN1Q9H668 368 aaKnown RBP9.13□□□□□ -0.95
HDDC3-204ENST00000559834 HAUS4Q9H6D7 363 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 AIPL1Q9NZN9 384 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 MYO1AQ9UBC5 1043 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 TMEM98Q9Y2Y6 226 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 KALRNO60229 2985 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 LRP4O75096 1905 aa9.13□□□□□ -0.95
HDDC3-204ENST00000559834 SCN8AQ9UQD0 1980 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 TRBV23OR9-2A0A075B6M9 112 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 LRRC53A6NM62 1247 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 DUX1O43812 170 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 RAD1O60671 282 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 ASMTLO95671 621 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 SLC2A4P14672 509 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 LIFP15018 202 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 CTPS1P17812 591 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 CA4P22748 312 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 MPSTP25325 297 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 MAXP61244 160 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 MC1RQ01726 317 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 PTSQ03393 145 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 KLHL30Q0D2K2 578 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 KCNAB2Q13303 367 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 CLCA4Q14CN2 919 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 CCDC122Q5T0U0 273 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 LRRC66Q68CR7 880 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 WDR74Q6RFH5 385 aaPredicted RBP9.12□□□□□ -0.95
HDDC3-204ENST00000559834 MARK2Q7KZI7 788 aaKnown RBP9.12□□□□□ -0.95
HDDC3-204ENST00000559834 ZNF765Q7L2R6 523 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 TSPAN33Q86UF1 283 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 FAM129CQ86XR2 697 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 NLGN4XQ8N0W4 816 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 SFRP1Q8N474 314 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 NLGN4YQ8NFZ3 816 aaPredicted RBP9.12□□□□□ -0.95
HDDC3-204ENST00000559834 ZNF564Q8TBZ8 553 aaPredicted RBP9.12□□□□□ -0.95
HDDC3-204ENST00000559834 PTCD2Q8WV60 388 aaKnown RBP9.12□□□□□ -0.95
HDDC3-204ENST00000559834 TEKT4Q8WW24 435 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 PIH1D2Q8WWB5 315 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 HSPH1Q92598 858 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 CSPG4P5Q96PW8 444 aa9.12□□□□□ -0.95
HDDC3-204ENST00000559834 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms