RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 MKKSQ9NPJ1 570 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 GPR108Q9NPR9 543 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 HINT3Q9NQE9 182 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 GIMAP4Q9NUV9 329 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 MTMR10Q9NXD2 777 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TAB2Q9NYJ8 693 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 COPG2Q9UBF2 871 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 CFDP1Q9UEE9 299 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 ZHX1Q9UKY1 873 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 PLAGL1Q9UM63 463 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 PCDHA12Q9UN75 941 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 CMAHPQ9Y471 501 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 NFE2L3Q9Y4A8 694 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 RAI2Q9Y5P3 530 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 STON1Q9Y6Q2 735 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 UTYO14607 1347 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ZNF335Q9H4Z2 1342 aaPredicted RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 ARHGEF40Q8TER5 1519 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 A0A1B0GVM2 712 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 LNP1A1A4G5 178 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 KDM4EB2RXH2 506 aaPredicted RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 B4DGG1 531 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 H0YGN5 161 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PLPP2O43688 288 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 TLR2O60603 784 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 MITFO75030 526 aaPredicted RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 CNOT3O75175 753 aaKnown RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 NDUFB8O95169 186 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 EPN2O95208 641 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ZWINTO95229 277 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 GGPS1O95749 300 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 AFPP02771 609 aaKnown RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 IGKV2-30P06310 120 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 MMP3P08254 477 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 FGF2P09038 288 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 TNFRSF1BP20333 461 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 DNASE1P24855 282 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 MC5RP33032 325 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 GPR143P51810 404 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PNLIPRP2P54317 469 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 SSBP2P81877 361 aaPredicted RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 MRPS5P82675 430 aaKnown RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 ADORA2A-AS1P86434 159 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ROR1Q01973 937 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PPARDQ03181 441 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 DDR1Q08345 913 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PRPF4BQ13523 1007 aaKnown RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 CAMK2DQ13557 499 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 FHL1Q13642 323 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 CTTNQ14247 550 aaKnown RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 PLCB4Q15147 1175 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 SHBQ15464 509 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 EFNB3Q15768 340 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 LETM2Q2VYF4 491 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PCGF3Q3KNV8 242 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ZNF628Q5EBL2 1059 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PAPPA-AS1Q5QFB9 102 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 C6orf141Q5SZD1 244 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 NSUN5P2Q63ZY6 315 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 C11orf87Q6NUJ2 197 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ZNF517Q6ZMY9 492 aaPredicted RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 LINGO2Q7L985 606 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 UBE2Q1Q7Z7E8 422 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PIP4P1Q86T03 277 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 TSPAN33Q86UF1 283 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 VSIG1Q86XK7 387 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ANKRD13BQ86YJ7 626 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 FOXRED2Q8IWF2 684 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 WDR63Q8IWG1 891 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ZDHHC23Q8IYP9 409 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 NKAIN3Q8N8D7 197 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 TDRD5Q8NAT2 981 aaKnown RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 AVL9Q8NBF6 648 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 POGLUT1Q8NBL1 392 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 SCCPDHQ8NBX0 429 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 BEST2Q8NFU1 509 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 OR2AK2Q8NG84 335 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 DUSP19Q8WTR2 217 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 SLC35F5Q8WV83 523 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ZFAND2BQ8WV99 257 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 UBE2Q2Q8WVN8 375 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 TEKT4Q8WW24 435 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ZNF622Q969S3 477 aaKnown RBP eCLIP1.66□□□□□ -2.14
USP3-209ENST00000558925 RHBDF1Q96CC6 855 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 GRAMD2BQ96HH9 432 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 LINC00615Q96LM1 132 aaPredicted RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 CEP295NLQ96MC4 621 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 TMEM68Q96MH6 324 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 CDRT15Q96T59 188 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PCYT2Q99447 389 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 DDOQ99489 341 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 NCAPGQ9BPX3 1015 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PCGF1Q9BSM1 259 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 KIFC3Q9BVG8 833 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 FAM234AQ9H0X4 552 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 GOLPH3LQ9H4A5 285 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 OPA3Q9H6K4 179 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PPP1R3EQ9H7J1 279 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 DNAJC18Q9H819 358 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 NOX4Q9NPH5 578 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms