RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 PNCKQ6P2M8 343 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 SLC22A18ASQ8N1D0 253 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 PGBD5Q8N414 524 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 NETO2Q8NC67 525 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 MAIP1Q8WWC4 291 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 HTR3CQ8WXA8 447 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 AP2M1Q96CW1 435 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 DTD2Q96FN9 168 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 AGAP3Q96P47 875 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 LYSMD1Q96S90 227 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 OSBPL8Q9BZF1 889 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 STN1Q9H668 368 aaKnown RBP8.66□□□□□ -1.02
USP3-208ENST00000558285 RMI1Q9H9A7 625 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 FAM153AQ9UHL3 310 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 MOSPD1Q9UJG1 213 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CNOT1A5YKK6 2376 aaKnown RBP8.65□□□□□ -1.02
USP3-208ENST00000558285 FAM221BA6H8Z2 402 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 KLHL33A6NCF5 533 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 C3orf70A6NLC5 250 aaPredicted RBP8.65□□□□□ -1.03
USP3-208ENST00000558285 GPR89AB7ZAQ6 455 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 PSMD3O43242 534 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 SPINT1O43278 529 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 SIGLEC6O43699 453 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 HYAL3O43820 417 aaPredicted RBP8.65□□□□□ -1.03
USP3-208ENST00000558285 PPFIA2O75334 1257 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 NDST3O95803 873 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 ATXN1LP0C7T5 689 aaKnown RBP8.65□□□□□ -1.03
USP3-208ENST00000558285 GPR89BP0CG08 455 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 HLA-DPA1P20036 260 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 GEMP55040 296 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 RALGDSQ12967 914 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 BNIP3Q12983 259 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 LRP8Q14114 963 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 PRKD1Q15139 912 aaPredicted RBP8.65□□□□□ -1.03
USP3-208ENST00000558285 TUBB8Q3ZCM7 444 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 LRRC66Q68CR7 880 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 DARS2Q6PI48 645 aaKnown RBP8.65□□□□□ -1.03
USP3-208ENST00000558285 UNQ6494/PRO21346Q6UXR6 183 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 ADAMTSL4Q6UY14 1074 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 TMPRSS7Q7RTY8 843 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 PID1Q7Z2X4 250 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 RD3Q7Z3Z2 195 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 CHCHD4Q8N4Q1 142 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.65□□□□□ -1.03
USP3-208ENST00000558285 ARL10Q8N8L6 244 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 PIH1D2Q8WWB5 315 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 NXPE2Q96DL1 559 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 IMP4Q96G21 291 aaKnown RBP8.65□□□□□ -1.03
USP3-208ENST00000558285 TEKT5Q96M29 485 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 COQ10AQ96MF6 247 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 QKIQ96PU8 341 aaKnown RBP eCLIP8.65□□□□□ -1.031e-15■■■■■ 33.6
USP3-208ENST00000558285 DEPDC7Q96QD5 511 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 GPR63Q9BZJ6 419 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 ZCCHC2Q9C0B9 1178 aaKnown RBP8.65□□□□□ -1.03
USP3-208ENST00000558285 ZFYVE1Q9HBF4 777 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 GLOD4Q9HC38 313 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 MAGEE1Q9HCI5 957 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 CHKBQ9Y259 395 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 BTBD3Q9Y2F9 522 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 COQ6Q9Y2Z9 468 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 HYOU1Q9Y4L1 999 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 TRPM6Q9BX84 2022 aa8.65□□□□□ -1.03
USP3-208ENST00000558285 K7ESM1 405 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 RNF103O00237 685 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 FZD6O60353 706 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 SASH3O75995 380 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 MAP3K6O95382 1288 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 CTPS1P17812 591 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 VCLP18206 1134 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 TRIM23P36406 574 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 ACADVLP49748 655 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 EIF3EP60228 445 aaKnown RBP8.64□□□□□ -1.03
USP3-208ENST00000558285 SHBQ15464 509 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 SMAD1Q15797 465 aaKnown RBP8.64□□□□□ -1.03
USP3-208ENST00000558285 P3H1Q32P28 736 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 PROX2Q3B8N5 592 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 HSP90B2PQ58FF3 399 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 C6orf132Q5T0Z8 1188 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 RAD9BQ6WBX8 426 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 TAF8Q7Z7C8 310 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 ZC3H18Q86VM9 953 aaKnown RBP8.64□□□□□ -1.03
USP3-208ENST00000558285 TP53INP2Q8IXH6 220 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 LSMEM2Q8N112 164 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 SLC25A45Q8N413 288 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 ACRBPQ8NEB7 543 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 GIMAP7Q8NHV1 300 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 ARRDC2Q8TBH0 407 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 MAPK15Q8TD08 544 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 HIC2Q96JB3 615 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 APOLD1Q96LR9 279 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 FAM210AQ96ND0 272 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 ZSCAN5AQ9BUG6 496 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 TEX101Q9BY14 249 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 FAM83DQ9H4H8 585 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 MBNL1Q9NR56 388 aaKnown RBP8.64□□□□□ -1.03
USP3-208ENST00000558285 TRNAU1APQ9NX07 287 aaKnown RBP8.64□□□□□ -1.03
USP3-208ENST00000558285 AKAP7Q9P0M2 348 aaPredicted RBP8.64□□□□□ -1.03
USP3-208ENST00000558285 CLCA2Q9UQC9 943 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 PKP3Q9Y446 797 aa8.64□□□□□ -1.03
USP3-208ENST00000558285 OR1A2Q9Y585 309 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms