RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 HMGCLP35914 325 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 SUOXP51687 545 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 CDKN2DP55273 166 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 DNAJB13P59910 316 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 RAD51Q06609 339 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 DLG1Q12959 904 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 USP4Q13107 963 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 PDAP1Q13442 181 aaKnown RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 TECRLQ5HYJ1 363 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 ASRGL1Q7L266 308 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 STK40Q8N2I9 435 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 RYBPQ8N488 228 aaPredicted RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 TTC30BQ8N4P2 665 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 IRF7Q92985 503 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 LRRC3BQ96PB8 259 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 AARSD1Q9BTE6 412 aaKnown RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 LRMDAQ9H2I8 198 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 SYTL2Q9HCH5 934 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 TAS2R13Q9NYV9 303 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 EVLQ9UI08 416 aaPredicted RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 CLEC4EQ9ULY5 219 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 RAP2CQ9Y3L5 183 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 COMMD10Q9Y6G5 202 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 REV3LO60673 3130 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 SZT2Q5T011 3432 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 GOLGA8CPA6NN73 597 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 SLCO1B7G3V0H7 640 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 SMAD6O43541 496 aaKnown RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 PYGLP06737 847 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 SBK3P0C264 359 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 NQO1P15559 274 aaKnown RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 HLA-FP30511 346 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 MC4RP32245 332 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 PRKAA1Q13131 559 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 CCDC85BQ15834 202 aaPredicted RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 TRIM68Q6AZZ1 485 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 CAMK1DQ8IU85 385 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 KIRREL3Q8IZU9 778 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 PCDH20Q8N6Y1 951 aaKnown RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 KIAA1958Q8N8K9 716 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 SMARCD2Q92925 531 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 RSPRY1Q96DX4 576 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 ASB16Q96NS5 453 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 TTC1Q99614 292 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 SLC2A11Q9BYW1 496 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 CDH19Q9H159 772 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 ARHGEF3Q9NR81 526 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 DUS2Q9NX74 493 aaKnown RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 FKBPLQ9UIM3 349 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 LNPEPQ9UIQ6 1025 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 INTS6Q9UL03 887 aaKnown RBP16.8■□□□□ 0.28
LDLR-206ENST00000557958 SLC30A1Q9Y6M5 507 aa16.8■□□□□ 0.28
LDLR-206ENST00000557958 DLX3O60479 287 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 NPHS1O60500 1241 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 SRP72O76094 671 aaKnown RBP16.79■□□□□ 0.28
LDLR-206ENST00000557958 SERPINA6P08185 405 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 PABPC1P11940 636 aaKnown RBP16.79■□□□□ 0.28
LDLR-206ENST00000557958 MNAT1P51948 309 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 NAGLUP54802 743 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 PFKPQ01813 784 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 SEMA3AQ14563 771 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 ZRANB3Q5FWF4 1079 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 NAPRTQ6XQN6 538 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.79■□□□□ 0.28
LDLR-206ENST00000557958 NAT16Q8N8M0 369 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 PIH1D2Q8WWB5 315 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 LPGAT1Q92604 370 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 ZFYVE19Q96K21 471 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 LMLNQ96KR4 655 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 GAS2L1Q99501 681 aaPredicted RBP16.79■□□□□ 0.28
LDLR-206ENST00000557958 KLC4Q9NSK0 619 aa16.79■□□□□ 0.28
LDLR-206ENST00000557958 A0A1W2PPC1 479 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 A0A1W2PQ67 120 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 RHOBTB1O94844 696 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 WISP3O95389 354 aaPredicted RBP16.78■□□□□ 0.28
LDLR-206ENST00000557958 SRCP12931 536 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 TYRP14679 529 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 CALB2P22676 271 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 PGGT1BP53609 377 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 CACNG1Q06432 222 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 CTC1Q2NKJ3 1217 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 FUT11Q495W5 492 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 LY6G5CQ5SRR4 150 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 C22orf39Q6P5X5 142 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 CERS6Q6ZMG9 384 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 ALYREFQ86V81 257 aaKnown RBP16.78■□□□□ 0.28
LDLR-206ENST00000557958 ADGRG2Q8IZP9 1017 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 SPATA6LQ8N4H0 392 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 OR6K2Q8NGY2 324 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 NSL1Q96IY1 281 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 CNDP1Q96KN2 507 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 TMEM237Q96Q45 408 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 NMUR2Q9GZQ4 415 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 S1PR5Q9H228 398 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 POMKQ9H5K3 350 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 ZFYVE1Q9HBF4 777 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 PNPOQ9NVS9 261 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 IL17CQ9P0M4 197 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 VTI1BQ9UEU0 232 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 HAO1Q9UJM8 370 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms