RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 YWHAHQ04917 246 aaPredicted RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 SCN1BQ07699 218 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 GRSF1Q12849 480 aaKnown RBP eCLIP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 PTK6Q13882 451 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 SOWAHAQ2M3V2 549 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 AKNAD1Q5T1N1 836 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 IYDQ6PHW0 289 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 PQLC2Q6ZP29 291 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 DPPA4Q7L190 304 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 HIST3H2AQ7L7L0 130 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 LINGO2Q7L985 606 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 OTOAQ7RTW8 1153 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 CENPVQ7Z7K6 275 aaPredicted RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 SDCCAG8Q86SQ7 713 aaPredicted RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 TSPAN33Q86UF1 283 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 WDR63Q8IWG1 891 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 UNC45BQ8IWX7 931 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 MCEMP1Q8IX19 187 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 CCAR2Q8N163 923 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 SLC25A41Q8N5S1 370 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 IQUBQ8NA54 791 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 SPC24Q8NBT2 197 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 RBM15BQ8NDT2 890 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 CFAP61Q8NHU2 1237 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 OSR1Q8TAX0 266 aaPredicted RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 CAGE1Q8TC20 777 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 TRPC4APQ8TEL6 797 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 KCNE4Q8WWG9 221 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 SNAPC3Q92966 411 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 PTP4A1Q93096 173 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 MR1Q95460 341 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 VCPIP1Q96JH7 1222 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 EGLN2Q96KS0 407 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 ZNF570Q96NI8 536 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 NUDCD1Q96RS6 583 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 ACOX2Q99424 681 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 MGME1Q9BQP7 344 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 PCGF1Q9BSM1 259 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 KRTAP3-1Q9BYR8 98 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 RTN4RQ9BZR6 473 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 GPR88Q9GZN0 384 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 SLCO5A1Q9H2Y9 848 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 MMADHCQ9H3L0 296 aaPredicted RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 MMRN2Q9H8L6 949 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 CNOT10Q9H9A5 744 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 PNRC2Q9NPJ4 139 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 GPR108Q9NPR9 543 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 MBNL1Q9NR56 388 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 PAPOLBQ9NRJ5 636 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 OLAHQ9NV23 265 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 ASB6Q9NWX5 421 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 ANKRD10Q9NXR5 420 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 DDX43Q9NXZ2 648 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 CISD1Q9NZ45 108 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 HACL1Q9UJ83 578 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 FBXW11Q9UKB1 542 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 WBP11Q9Y2W2 641 aaKnown RBP3.18□□□□□ -1.9
TRAV28-201ENST00000557548 TSC22D4Q9Y3Q8 395 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 CLSPNQ9HAW4 1339 aa3.18□□□□□ -1.9
TRAV28-201ENST00000557548 GTPBP10A4D1E9 387 aaKnown RBP3.17□□□□□ -1.9
TRAV28-201ENST00000557548 TMEM202A6NGA9 273 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 CGB1A6NKQ9 187 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 DAB1O75553 588 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 CELF2O95319 508 aaKnown RBP3.17□□□□□ -1.9
TRAV28-201ENST00000557548 ICAM1P05362 532 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 CYC1P08574 325 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 SUPT20HL2P0C7V6 817 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 THEGLP0DJG4 465 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 CBSLP0DN79 551 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 ZNF20P17024 532 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 GJA1P17302 382 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 DCTDP32321 178 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 TNFSF8P32971 234 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 CBSP35520 551 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 RARRES1P49788 294 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 MMP14P50281 582 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 ARSEP51690 589 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 BMXP51813 675 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 CAPZA1P52907 286 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 PPP2R2BQ00005 443 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 C17orf67Q0P5P2 114 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 COASYQ13057 564 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 KRT33BQ14525 404 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 ZNF273Q14593 569 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 LPIN1Q14693 890 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 PKN2Q16513 984 aaKnown RBP3.17□□□□□ -1.9
TRAV28-201ENST00000557548 PNLIPRP3Q17RR3 467 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 LSM12Q3MHD2 195 aaKnown RBP3.17□□□□□ -1.9
TRAV28-201ENST00000557548 SUPT20HL1Q3ZLR7 823 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 CBWD6Q4V339 395 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 ZRANB3Q5FWF4 1079 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 NHSL2Q5HYW2 709 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 CBWD3Q5JTY5 395 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 TTC39AQ5SRH9 613 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 ARMC4Q5T2S8 1044 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 HECTD2Q5U5R9 776 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 PRAMEF17Q5VTA0 474 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 KRT39Q6A163 491 aa3.17□□□□□ -1.9
TRAV28-201ENST00000557548 DHRS7BQ6IAN0 325 aaPredicted RBP3.17□□□□□ -1.9
TRAV28-201ENST00000557548 TEX38Q6PEX7 206 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms