RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 GOLGA6L10A0A0M3HER8 536 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 PDE2AO00408 941 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-228ENST00000557302 AURKAO14965 403 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 ZNF185O15231 689 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 SDC3O75056 442 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 USP12O75317 370 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 AP2A1O95782 977 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 CSF2P04141 144 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 MYCLP1P12525 358 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-228ENST00000557302 JUNDP17535 347 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 HMGCLP35914 325 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 GRK6P43250 576 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 KCNJ1P48048 391 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 HNRNPKP61978 463 aaKnown RBP eCLIP13.54□□□□□ -0.24
SHMT2-228ENST00000557302 BNIP3Q12983 259 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 OLIG2Q13516 323 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 PAPD7Q5XG87 772 aaKnown RBP13.54□□□□□ -0.24
SHMT2-228ENST00000557302 KCTD11Q693B1 232 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 ENPP7Q6UWV6 458 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 ADAMTSL4Q6UY14 1074 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 C4orf22Q6V702 233 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 DBX2Q6ZNG2 339 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 GLT6D1Q7Z4J2 308 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 HEATR4Q86WZ0 1026 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 PDCD7Q8N8D1 485 aaKnown RBP13.54□□□□□ -0.24
SHMT2-228ENST00000557302 DEFB124Q8NES8 71 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 MAGOHBQ96A72 148 aaKnown RBP13.54□□□□□ -0.24
SHMT2-228ENST00000557302 EID2BQ96D98 161 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 TEX101Q9BY14 249 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 CDH19Q9H159 772 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 ETNK1Q9HBU6 452 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 KLQ9UEF7 1012 aa13.54□□□□□ -0.24
SHMT2-228ENST00000557302 FEZ2Q9UHY8 353 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-228ENST00000557302 TMEM131Q92545 1883 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 ERI2A8K979 691 aaKnown RBP13.53□□□□□ -0.24
SHMT2-228ENST00000557302 E7EVH7 732 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 PIAS2O75928 621 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 RASGRP1O95267 797 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 ZSCAN5DPP0CG00 497 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 LMAN1P49257 510 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 BLKP51451 505 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 NOVA1P51513 510 aaKnown RBP13.53□□□□□ -0.24
SHMT2-228ENST00000557302 DCDC1P59894 354 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 SRP54P61011 504 aaKnown RBP13.53□□□□□ -0.24
SHMT2-228ENST00000557302 CDK3Q00526 305 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 PPARDQ03181 441 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 HENMT1Q5T8I9 393 aaKnown RBP13.53□□□□□ -0.24
SHMT2-228ENST00000557302 ALS2CLQ60I27 953 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 DGLUCYQ7Z3D6 616 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 PRUNE1Q86TP1 453 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 LINC00523Q86TU6 105 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 HID1Q8IV36 788 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 PHACTR4Q8IZ21 702 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 TTC30BQ8N4P2 665 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 GLIS1Q8NBF1 620 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 OR56A4Q8NGH8 313 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 RHBDD1Q8TEB9 315 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 BTN2A2Q8WVV5 523 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 AGAP2Q99490 1192 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 LGR4Q9BXB1 951 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 SLC13A1Q9BZW2 595 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 ARNT2Q9HBZ2 717 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 RAB6BQ9NRW1 208 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 NFKBIL1Q9UBC1 381 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-228ENST00000557302 APOBEC3BQ9UH17 382 aaKnown RBP13.53□□□□□ -0.24
SHMT2-228ENST00000557302 KLF15Q9UIH9 416 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 SAR1BQ9Y6B6 198 aa13.53□□□□□ -0.24
SHMT2-228ENST00000557302 TP53BP1Q12888 1972 aaPredicted RBP13.52□□□□□ -0.24
SHMT2-228ENST00000557302 TMEM202A6NGA9 273 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 TNFRSF10CO14798 259 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 PHF2O75151 1096 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 KCNK5O95279 499 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 SOD1P00441 154 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 CEACAM1P13688 526 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 BPIP17213 487 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 DGKAP23743 735 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 RPL22P35268 128 aaKnown RBP13.52□□□□□ -0.25
SHMT2-228ENST00000557302 COILP38432 576 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-228ENST00000557302 HK3P52790 923 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 SEMA5AQ13591 1074 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 CYP1B1Q16678 543 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 ALG11Q2TAA5 492 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 ZDHHC20Q5W0Z9 365 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 DENND5AQ6IQ26 1287 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 KANSL1Q7Z3B3 1105 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 RBFAQ8N0V3 343 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 GPR26Q8NDV2 337 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 ZNF548Q8NEK5 533 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-228ENST00000557302 OR1E3Q8WZA6 343 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 TSACCQ96A04 125 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-228ENST00000557302 HIC2Q96JB3 615 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 CAPZA3Q96KX2 299 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 CAMK1GQ96NX5 476 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 ZSCAN5AQ9BUG6 496 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 SPATA16Q9BXB7 569 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 FGF22Q9HCT0 170 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 BPIFA1Q9NP55 256 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 UCKL1Q9NWZ5 548 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 IL17CQ9P0M4 197 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 SPASTQ9UBP0 616 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms