RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ZRSR2Q15696 482 aaKnown RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 KRT24Q2M2I5 525 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 HIST2H2BDQ6DRA6 164 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 SLC46A3Q7Z3Q1 461 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 HAPLN4Q86UW8 402 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 MYPOPQ86VE0 399 aaPredicted RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 TMEM219Q86XT9 240 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 WDR63Q8IWG1 891 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 CHERPQ8IWX8 916 aaKnown RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 ZNF34Q8IZ26 560 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 RNF113BQ8IZP6 322 aaKnown RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 FBXO17Q96EF6 278 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 TRMT61BQ9BVS5 477 aaKnown RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 IFIH1Q9BYX4 1025 aaKnown RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 ZNF334Q9HCZ1 680 aaPredicted RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 ZFP57Q9NU63 452 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 GGA3Q9NZ52 723 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 UTYO14607 1347 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 GREB1LQ9C091 1923 aaPredicted RBP3.72□□□□□ -1.81
SCFD1-216ENST00000555550 IGKV3D-20A0A0C4DH25 116 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 A0A1W2PS18 150 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 IFNL4K9M1U5 179 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 SLC22A3O75751 556 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 HLA-DOBP13765 273 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 ITGA2P17301 1181 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 ANOS1P23352 680 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 ABCD1P33897 745 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 ATP12AP54707 1039 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 CCDC96Q2M329 555 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 COL28A1Q2UY09 1125 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 TRNP1Q6NT89 227 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 DUS1LQ6P1R4 473 aaKnown RBP3.72□□□□□ -1.81
SCFD1-216ENST00000555550 GFRALQ6UXV0 394 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 QSOX2Q6ZRP7 698 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 MARK2Q7KZI7 788 aaKnown RBP3.72□□□□□ -1.81
SCFD1-216ENST00000555550 DGLUCYQ7Z3D6 616 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 DSG4Q86SJ6 1040 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 CADM4Q8NFZ8 388 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 OR2AK2Q8NG84 335 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 ABTB1Q969K4 478 aaPredicted RBP3.72□□□□□ -1.81
SCFD1-216ENST00000555550 ORAI1Q96D31 301 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 RNF125Q96EQ8 232 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 SLC41A2Q96JW4 573 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 ZNF583Q96ND8 569 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 FAM110AQ9BQ89 295 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 GLIS2Q9BZE0 524 aaPredicted RBP3.72□□□□□ -1.81
SCFD1-216ENST00000555550 SLC25A18Q9H1K4 315 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 KCNN2Q9H2S1 579 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 PLEKHA4Q9H4M7 779 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 PLEKHA5Q9HAU0 1116 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 LUZP4Q9P127 313 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 SARDHQ9UL12 918 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 ARHGAP26Q9UNA1 814 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 FAF1Q9UNN5 650 aaPredicted RBP3.72□□□□□ -1.81
SCFD1-216ENST00000555550 TAF1P21675 1872 aa3.72□□□□□ -1.81
SCFD1-216ENST00000555550 FAM72CH0Y354 149 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 HOXC11O43248 304 aaPredicted RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 SEC31AO94979 1220 aaKnown RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 EGFP01133 1207 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 CORO1AP31146 461 aaKnown RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 KRT2P35908 639 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 ARL1P40616 181 aaPredicted RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 TERF1P54274 439 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 ISL1P61371 349 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 CSNK2A1P68400 391 aaPredicted RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 FOXM1Q08050 763 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 DHX8Q14562 1220 aaKnown RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 DRAP1Q14919 205 aaPredicted RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 BAK1Q16611 211 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 GSTA3Q16772 222 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 PDSS1Q5T2R2 415 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 FAM72AQ5TYM5 149 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 ZNF772Q68DY9 489 aaPredicted RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 SIGIRRQ6IA17 410 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 PLEKHA7Q6IQ23 1121 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 FAM72DQ6L9T8 149 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 C19orf48Q6RUI8 117 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 GSTA5Q7RTV2 222 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 FAM72BQ86X60 149 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 CCDC13Q8IYE1 715 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 CSNK2A3Q8NEV1 391 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 HTRA1Q92743 480 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 SAAL1Q96ER3 474 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 TMEM47Q9BQJ4 181 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 FBRSL1Q9HCM7 1045 aaKnown RBP3.71□□□□□ -1.82
SCFD1-216ENST00000555550 MMP25Q9NPA2 562 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 SLC6A13Q9NSD5 602 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 CAMK2AQ9UQM7 478 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 CEPT1Q9Y6K0 416 aa3.71□□□□□ -1.82
SCFD1-216ENST00000555550 VCYO14598 125 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 LDLRAD4O15165 306 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 NCAM2O15394 837 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 PYGLP06737 847 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 PRSS1P07477 247 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 HOXB5P09067 269 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 MYOD1P15172 320 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 MARK3P27448 753 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 CDAP32320 146 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 CPOXP36551 454 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms