RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CNOT11Q9UKZ1 510 aaKnown RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 MIA3Q5JRA6 1907 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 DNAH14Q0VDD8 3507 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 LOC100653049A0A140TA62 436 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ANTXRLA6NF34 631 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PAPSS1O43252 624 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 SPAG6O75602 509 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 FAM155BO75949 473 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 KRT34O76011 436 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 KRT38O76015 456 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 KLKB1P03952 638 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 EIF2S1P05198 315 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 BPGMP07738 259 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PSMA2P25787 234 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 GJA4P35212 333 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ACADSBP45954 432 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 RPL34P49207 117 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 NDST2P52849 883 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 DAOAP59103 153 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 TXNL4AP83876 142 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 SLC6A3Q01959 620 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 MESP2Q0VG99 397 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 EFEMP1Q12805 493 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 MTM1Q13496 603 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PIGHQ14442 188 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PON2Q15165 354 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 RGS21Q2M5E4 152 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ITPRIPL2Q3MIP1 535 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ZBED5Q49AG3 693 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 C6orf183Q5T699 404 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 METTL21CQ5VZV1 264 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PDPK2PQ6A1A2 396 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 KRT80Q6KB66 452 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 NANOGP8Q6NSW7 305 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 TMEM214Q6NUQ4 689 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 MFSD7Q6UXD7 560 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ZCCHC23Q6ZST2 131 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 BBS7Q8IWZ6 715 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 SIX6OS1Q8N1H7 587 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 HM13Q8TCT9 377 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 TFB1MQ8WVM0 346 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 P2RY11Q96G91 374 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PIWIL1Q96J94 861 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 HSFY1Q96LI6 401 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ARPC5LQ9BPX5 153 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 SLC13A1Q9BZW2 595 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 GBA3Q9H227 469 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ANLNQ9NQW6 1124 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 CNGB3Q9NQW8 809 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PNPLA3Q9NST1 481 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 MKS1Q9NXB0 559 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 SFMBT1Q9UHJ3 866 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 DNMT3LQ9UJW3 386 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PRPF19Q9UMS4 504 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 DNAJC16Q9Y2G8 782 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 RNF11Q9Y3C5 154 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 MYO18AQ92614 2054 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 RIF1Q5UIP0 2472 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 FOXD2O60548 495 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A9O60656 530 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 SULT1C4O75897 302 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 CAPNS1P04632 268 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 FYNP06241 537 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 HMBSP08397 361 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 COX4I1P13073 169 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PDGFRAP16234 1089 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 NAT1P18440 290 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A6P19224 532 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 NCF2P19878 526 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A1P22309 533 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A4P22310 534 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 KCNA4P22459 653 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A3P35503 534 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A5P35504 534 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ELK3P41970 407 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ARPC4P59998 168 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF252P-AS1Q0IIN9 211 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 TCF15Q12870 199 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PEX6Q13608 980 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PDGFRLQ15198 375 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 GAB4Q2WGN9 574 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 EGFLAMQ63HQ2 1017 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 SPOCD1Q6ZMY3 1216 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 SLC7A5P1Q8MH63 180 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 LILRA2Q8N149 483 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PRSS33Q8NF86 280 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 TBC1D15Q8TC07 691 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 DLG3Q92796 817 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PKP2Q99959 881 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 RTKNQ9BST9 563 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 HGH1Q9BTY7 390 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 OSBPL11Q9BXB4 747 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UNKQ9C0B0 810 aaKnown RBP7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A7Q9HAW7 530 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A10Q9HAW8 530 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 UGT1A8Q9HAW9 530 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 DNAJC28Q9NX36 388 aa7.67□□□□□ -1.18
LIMA1-216ENST00000552909 PIEZO1Q92508 2521 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 E2F8A0AVK6 867 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 H0Y858 1186 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms