RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DOK6Q6PKX4 331 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 RFX8Q6ZV50 586 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 CYP4V2Q6ZWL3 525 aaPredicted RBP17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 ARHGAP22Q7Z5H3 698 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 TSPAN33Q86UF1 283 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 SLC37A2Q8TED4 501 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 PDCD6IPQ8WUM4 868 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 TEFMQ96QE5 360 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 CLSTN2Q9H4D0 955 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 SPTAN1Q13813 2472 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 GOLGA6CA6NDK9 693 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 GOLGA6BA6NDN3 693 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 A8MU76 341 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 EIF3CLB5ME19 914 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 PSMD11O00231 422 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 SOCS5O75159 536 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 EML2O95834 649 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 PEX11BO96011 259 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 GOLGA6DP0CG33 693 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 MAP4P27816 1152 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 RENBPP51606 427 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 DPTQ07507 201 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 TRAF2Q12933 501 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 PEX6Q13608 980 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 PYCR3Q53H96 274 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 ERMARDQ5T6L9 678 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 ATP1A1-AS1Q5TC04 95 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 TMCO4Q5TGY1 634 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 DCUN1D2Q6PH85 259 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 RFLNAQ6ZTI6 216 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 TECPR1Q7Z6L1 1165 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 MCOLN2Q8IZK6 566 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 FAM26EQ8N5C1 309 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 FNIP1Q8TF40 1166 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 MIB2Q96AX9 1013 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 OR2M4Q96R27 311 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 EIF3CQ99613 913 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 AGPAT1Q99943 283 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 APMAPQ9HDC9 416 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 SEPT11Q9NVA2 429 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 GOLGA6AQ9NYA3 693 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 DACH1Q9UI36 760 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 PHTF1Q9UMS5 762 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 TMEM98Q9Y2Y6 226 aa17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 TMEM184BQ9Y519 407 aaPredicted RBP17.73■□□□□ 0.43
CLSTN3-214ENST00000542663 TRBV23OR9-2A0A075B6M9 112 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 ABHD18Q0P651 414 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 DEFB109BQ30KR1 87 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 SNAP47Q5SQN1 464 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 CDKAL1Q5VV42 579 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 TRIM74Q86UV6 250 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 SFRP1Q8N474 314 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 KIAA1143Q96AT1 154 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 ZNF599Q96NL3 588 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 MCCC1Q96RQ3 725 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 NUDCD1Q96RS6 583 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 NOD2Q9HC29 1040 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 FBXO8Q9NRD0 319 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 PCSK1NQ9UHG2 260 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 CD84Q9UIB8 345 aa17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 PCYT1BQ9Y5K3 369 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-214ENST00000542663 SPTBN1Q01082 2364 aaKnown RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 A0A1W2PQ67 120 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 PRR19A6NJB7 356 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 DAPK3O43293 454 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 DLGAP3O95886 979 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 CYP2A6P11509 494 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 CD97P48960 835 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 DPYSQ14117 519 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 LACTB2Q53H82 288 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 PPP6R3Q5H9R7 873 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 WDR74Q6RFH5 385 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 CEACAM20Q6UY09 585 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 ADAMTSL4Q6UY14 1074 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 OR10G6Q8NH81 332 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 APOBEC4Q8WW27 367 aaKnown RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 STARD8Q92502 1023 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 SCRN2Q96FV2 425 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 AHCYL2Q96HN2 611 aaKnown RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 SMIM14Q96QK8 99 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 SLC38A3Q99624 504 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 ZMYND15Q9H091 742 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 ABCG8Q9H221 673 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 TAS2R14Q9NYV8 317 aa17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 CWC15Q9P013 229 aaKnown RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 MRPS18BQ9Y676 258 aaKnown RBP17.71■□□□□ 0.43
CLSTN3-214ENST00000542663 BLACEA4D250 179 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 K7EM74 188 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 ATMINO43313 823 aaPredicted RBP17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 STK17BO94768 372 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 MAP3K6O95382 1288 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 NR1D1P20393 614 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 PSMA2P25787 234 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 GPR1P46091 355 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 MAMLD1Q13495 774 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 ZNF235Q14590 738 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 SYCP1Q15431 976 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 CRTC2Q53ET0 693 aaPredicted RBP17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 ACAD10Q6JQN1 1059 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms