RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 KCTD15Q96SI1 283 aaPredicted RBP7.28□□□□□ -1.24
YBX3-209ENST00000540747 EIF3CQ99613 913 aaKnown RBP7.28□□□□□ -1.24
YBX3-209ENST00000540747 SYT11Q9BT88 431 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 SELENOOQ9BVL4 669 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 VPS16Q9H269 839 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 FBXO8Q9NRD0 319 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 SAMSN1Q9NSI8 373 aaKnown RBP7.28□□□□□ -1.24
YBX3-209ENST00000540747 GPATCH2LQ9NWQ4 482 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 SIDT1Q9NXL6 827 aaKnown RBP7.28□□□□□ -1.24
YBX3-209ENST00000540747 KCTD5Q9NXV2 234 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 SLC39A1Q9NY26 324 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 PLAAQ9Y263 795 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 PPIL1Q9Y3C6 166 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 PLEKHM1Q9Y4G2 1056 aa7.28□□□□□ -1.24
YBX3-209ENST00000540747 PCYT1BQ9Y5K3 369 aaPredicted RBP7.28□□□□□ -1.24
YBX3-209ENST00000540747 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 A0A1W2PQ67 120 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 TTC24A2A3L6 582 aaPredicted RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 EFCAB7A8K855 629 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 A8MX80 341 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 K7EM74 188 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 ZW10O43264 779 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 ERCC2P18074 760 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 TNFAIP3P21580 790 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 F8A1P23610 371 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 MAP4P27816 1152 aaKnown RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 STAT5AP42229 794 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 POLR2FP61218 127 aaKnown RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 SLC10A7Q0GE19 358 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 TRAF2Q12933 501 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 MAP7Q14244 749 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 PTPRRQ15256 657 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 LACTB2Q53H82 288 aaPredicted RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 PYCR3Q53H96 274 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 DCAF12Q5T6F0 453 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 ATP1A1-AS1Q5TC04 95 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 TMCO4Q5TGY1 634 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 DNAJC24Q6P3W2 148 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 SCYL2Q6P3W7 929 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 RFLNAQ6ZTI6 216 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 RFX8Q6ZV50 586 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 Q6ZVL8 140 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 TSPAN33Q86UF1 283 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 NLRP8Q86W28 1048 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 SLC37A2Q8TED4 501 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 APOBEC4Q8WW27 367 aaKnown RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 STARD8Q92502 1023 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 SCRN2Q96FV2 425 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 COX14Q96I36 57 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 ZNF599Q96NL3 588 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 OR2M4Q96R27 311 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 MGME1Q9BQP7 344 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 ZPBPQ9BS86 351 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 SNRNP25Q9BV90 132 aaKnown RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 CINPQ9BW66 212 aaPredicted RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 CLSTN2Q9H4D0 955 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 GPN2Q9H9Y4 310 aaPredicted RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 NOD2Q9HC29 1040 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 APMAPQ9HDC9 416 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 ZNF71Q9NQZ8 489 aaPredicted RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 FAM207AQ9NSI2 230 aaPredicted RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 KCNK4Q9NYG8 393 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 TAB2Q9NYJ8 693 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 DONSONQ9NYP3 566 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 MOSPD1Q9UJG1 213 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 AP4E1Q9UPM8 1137 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 PCDHGC4Q9Y5F7 938 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 KCNMB2Q9Y691 235 aa7.27□□□□□ -1.25
YBX3-209ENST00000540747 MN1Q10571 1320 aaPredicted RBP7.27□□□□□ -1.25
YBX3-209ENST00000540747 BLACEA4D250 179 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 PRR19A6NJB7 356 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 EEF2KO00418 725 aaKnown RBP7.26□□□□□ -1.25
YBX3-209ENST00000540747 MTSS1O43312 755 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 FZD6O60353 706 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 STK17BO94768 372 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 CPP00450 1065 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 ANKRD34CP0C6C1 535 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 PRKAR1AP10644 381 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 HSPA9P38646 679 aaKnown RBP7.26□□□□□ -1.25
YBX3-209ENST00000540747 ACTR1BP42025 376 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 HCAR3P49019 387 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 SCNN1BP51168 640 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 RENBPP51606 427 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 ACTR1AP61163 376 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 UBE2HP62256 183 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 KLRB1Q12918 225 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 MAMLD1Q13495 774 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 PEX6Q13608 980 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 LRP8Q14114 963 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 IHHQ14623 411 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 LBRQ14739 615 aaKnown RBP7.26□□□□□ -1.25
YBX3-209ENST00000540747 NCAPHQ15003 741 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 KRT31Q15323 416 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 TPD52L1Q16890 204 aaPredicted RBP7.26□□□□□ -1.25
YBX3-209ENST00000540747 CT47A1Q5JQC4 288 aaPredicted RBP7.26□□□□□ -1.25
YBX3-209ENST00000540747 PLEKHA7Q6IQ23 1121 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 TCTN3Q6NUS6 607 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 CEACAM20Q6UY09 585 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 ZNF765Q7L2R6 523 aa7.26□□□□□ -1.25
YBX3-209ENST00000540747 ZNF761Q86XN6 746 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms