RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MTF2Q9Y483 593 aaPredicted RBP7.44□□□□□ -1.22
CD44-228ENST00000528455 DMDP11532 3685 aa7.44□□□□□ -1.22
CD44-228ENST00000528455 TCRBV7S3A2A0A539 114 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 ESYT3A0FGR9 886 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 CCDC151A5D8V7 595 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 E7ESA3 106 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 SYNCRIPO60506 623 aaKnown RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 RNASEH1O60930 286 aaKnown RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 PGLSO95336 258 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 RECKO95980 971 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 AGTP01019 485 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 PRLP01236 227 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 EPHX1P07099 455 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 HLA-DPA1P20036 260 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 NFKBIAP25963 317 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 ARNTP27540 789 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 NOS3P29474 1203 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 MAGEA3P43357 314 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 SUOXP51687 545 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 ARL4CP56559 192 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 ZBTB16Q05516 673 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 MSLNQ13421 630 aaPredicted RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 ELAVL3Q14576 367 aaKnown RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 SLMAPQ14BN4 828 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 SLC1A5Q15758 541 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 C2orf27AQ580R0 203 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 ZNF805Q5CZA5 627 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 ATXN7L2Q5T6C5 722 aaPredicted RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 ARMC12Q5T9G4 340 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 FAM46CQ5VWP2 391 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 DENND5AQ6IQ26 1287 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 BRAT1Q6PJG6 821 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 ZC3H14Q6PJT7 736 aaKnown RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 CYS1Q717R9 158 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 CENPUQ71F23 418 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 SYT13Q7L8C5 426 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 CAMK1DQ8IU85 385 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 AGGF1Q8N302 714 aaeCLIP7.43□□□□□ -1.22
CD44-228ENST00000528455 RYBPQ8N488 228 aaPredicted RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 TAB3Q8N5C8 712 aaPredicted RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.43□□□□□ -1.22
CD44-228ENST00000528455 DNAAF3Q8N9W5 541 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 BRSK1Q8TDC3 778 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 CLDN23Q96B33 292 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 SCRN2Q96FV2 425 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 SIGLEC10Q96LC7 697 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 TRIB3Q96RU7 358 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 ACOX2Q99424 681 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 FMO2Q99518 471 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 TBL1YQ9BQ87 522 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 NAT9Q9BTE0 207 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 FSD1LQ9BXM9 530 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 TMPRSS13Q9BYE2 586 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 TM6SF2Q9BZW4 377 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 RSPH9Q9H1X1 276 aaPredicted RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 SEMA4AQ9H3S1 761 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 TRABDQ9H4I3 376 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 AKTIPQ9H8T0 292 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 MAGEE1Q9HCI5 957 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 SPATA6Q9NWH7 488 aaPredicted RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 BFARQ9NZS9 450 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.43□□□□□ -1.22
CD44-228ENST00000528455 SCML1Q9UN30 329 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 TTLL3Q9Y4R7 772 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 RAI2Q9Y5P3 530 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 V9GYY5 206 aaPredicted RBP7.43□□□□□ -1.22
CD44-228ENST00000528455 CACNA1IQ9P0X4 2223 aa7.43□□□□□ -1.22
CD44-228ENST00000528455 CKAP5Q14008 2032 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 FRYLO94915 3013 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 COL4A3Q01955 1670 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 A0A1W2PQF6 199 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 MEGF11A6BM72 1044 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 LAMTOR5O43504 91 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 ERLIN1O75477 346 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 LEFTY1O75610 366 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 FGF1P05230 155 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 PDHA1P08559 390 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 GSTP1P09211 210 aaKnown RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 C5AR1P21730 350 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 ADRA1DP25100 572 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 ECHS1P30084 290 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 GRIA1P42261 906 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 RPS9P46781 194 aaKnown RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 VSNL1P62760 191 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 PDE1BQ01064 536 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 MAP9Q49MG5 647 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 DNAJC21Q5F1R6 531 aaKnown RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 PCID2Q5JVF3 399 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 SIRPB2Q5JXA9 342 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 SPDYCQ5MJ68 293 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 FNBP1LQ5T0N5 605 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 FAM182AQ5T1J6 154 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 FAXCQ5TGI0 409 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 ANKRD22Q5VYY1 191 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 EMBQ6PCB8 327 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 Q6ZS46 218 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 NLRP9Q7RTR0 991 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 TTC7BQ86TV6 843 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 RAVER1Q8IY67 606 aaKnown RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 STK40Q8N2I9 435 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms