RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MICALCLQ6ZW33 695 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 BBS12Q6ZW61 710 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 USP45Q70EL2 814 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 ZNF765Q7L2R6 523 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 LYSMD3Q7Z3D4 306 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 TMPRSS9Q7Z410 1059 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 KDELC2Q7Z4H8 507 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 NLRP8Q86W28 1048 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 RCOR2Q8IZ40 523 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 ZNF567Q8N184 647 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 PDCD7Q8N8D1 485 aaKnown RBP10.62□□□□□ -0.71
CD44-227ENST00000528086 SPC24Q8NBT2 197 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 GPBAR1Q8TDU6 330 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 PRR11Q96HE9 360 aaPredicted RBP10.62□□□□□ -0.71
CD44-227ENST00000528086 BAG1Q99933 345 aaPredicted RBP10.62□□□□□ -0.71
CD44-227ENST00000528086 FAM118BQ9BPY3 351 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 RIOK2Q9BVS4 552 aaKnown RBP10.62□□□□□ -0.71
CD44-227ENST00000528086 CYP4F12Q9HCS2 524 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 UBP1Q9NZI7 540 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 SEPT10Q9P0V9 454 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 SIRPGQ9P1W8 387 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 RPL26L1Q9UNX3 145 aaKnown RBP10.62□□□□□ -0.71
CD44-227ENST00000528086 SLC17A4Q9Y2C5 497 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 TMEM98Q9Y2Y6 226 aa10.62□□□□□ -0.71
CD44-227ENST00000528086 LOC285095A0A1B0GVY8 99 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 TCRBV7S2A1N4TA0A589 114 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 F5H423 210 aaPredicted RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 CACNB4O00305 520 aaPredicted RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 DDX3YO15523 660 aaKnown RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 DNAJC6O75061 913 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 ZRANB2O95218 330 aaKnown RBP eCLIP10.61□□□□□ -0.71
CD44-227ENST00000528086 EML2O95834 649 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 TNFP01375 233 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 ANXA6P08133 673 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 PYGMP11217 842 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 CDK4P11802 303 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 ZFXP17010 805 aaPredicted RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 NFKB1P19838 968 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 CHRNA4P43681 627 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 NR2C2P49116 596 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 E2F1Q01094 437 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 MSLNQ13421 630 aaPredicted RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 OLIG2Q13516 323 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 NR0B2Q15466 257 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 KHDC1Q4VXA5 237 aaKnown RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 LVRNQ6Q4G3 990 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 B3GNT8Q7Z7M8 397 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 DAAM2Q86T65 1068 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 ZC3H18Q86VM9 953 aaKnown RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 FSTL5Q8N475 847 aaPredicted RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 TTC30BQ8N4P2 665 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 GPR26Q8NDV2 337 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 PATE1Q8WXA2 126 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 AP2M1Q96CW1 435 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 CRELD1Q96HD1 420 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 MRGPRX2Q96LB1 330 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 QKIQ96PU8 341 aaKnown RBP eCLIP10.61□□□□□ -0.71
CD44-227ENST00000528086 MAK16Q9BXY0 300 aaKnown RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 CCDC86Q9H6F5 360 aaKnown RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 USP29Q9HBJ7 922 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 PADI4Q9UM07 663 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 SUFUQ9UMX1 484 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 PACSIN2Q9UNF0 486 aaPredicted RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 GPR34Q9UPC5 381 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 CLCA2Q9UQC9 943 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 GPSM3Q9Y4H4 160 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 ENTPD2Q9Y5L3 495 aa10.61□□□□□ -0.71
CD44-227ENST00000528086 ZNF106Q9H2Y7 1883 aaKnown RBP10.61□□□□□ -0.71
CD44-227ENST00000528086 FAM208BQ5VWN6 2430 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 C1orf232A0A0U1RR37 186 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 PPP1R12AO14974 1030 aaPredicted RBP10.6□□□□□ -0.71
CD44-227ENST00000528086 INPP4BO15327 924 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 CSO75390 466 aaKnown RBP10.6□□□□□ -0.71
CD44-227ENST00000528086 ATP1A1P05023 1023 aaKnown RBP10.6□□□□□ -0.71
CD44-227ENST00000528086 FGF1P05230 155 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 IVLP07476 585 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 ALPPL2P10696 532 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 ZNF30P17039 623 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 HTR1BP28222 390 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 RBL1P28749 1068 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 PTPN7P35236 360 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 BLKP51451 505 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 ARHGEF7Q14155 803 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 TFDP2Q14188 446 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 HLTFQ14527 1009 aaKnown RBP eCLIP10.6□□□□□ -0.71
CD44-227ENST00000528086 ELOCQ15369 112 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 SLC14A2Q15849 920 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 PCSK7Q16549 785 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 ISXQ2M1V0 245 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 PYCR3Q53H96 274 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 ZNF648Q5T619 568 aaPredicted RBP10.6□□□□□ -0.71
CD44-227ENST00000528086 RAET1GQ6H3X3 334 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 TMC3Q7Z5M5 1100 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 NRSN1Q8IZ57 195 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 ARL10Q8N8L6 244 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 ACTL9Q8TC94 416 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 TFB1MQ8WVM0 346 aaKnown RBP10.6□□□□□ -0.71
CD44-227ENST00000528086 CCDC74AQ96AQ1 378 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 ZNF830Q96NB3 372 aaPredicted RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms