RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 IMP4Q96G21 291 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 NSMCE3Q96MG7 304 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 PPP1R2P1Q96PQ5 205 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 LENG8Q96PV6 779 aaPredicted RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 NAP1L3Q99457 506 aaPredicted RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 TDRD1Q9BXT4 1180 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 POLR1BQ9H9Y6 1135 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 PCDH12Q9NPG4 1184 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 APOBEC3BQ9UH17 382 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 RSPH14Q9UHP6 348 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 KLF15Q9UIH9 416 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 PHTF1Q9UMS5 762 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 R3HDM2Q9Y2K5 976 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 SETXQ7Z333 2677 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 MGAQ8IWI9 3026 aa10.15□□□□□ -0.79
VPS28-204ENST00000526054 LRP4O75096 1905 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 CES2O00748 559 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 LIASO43766 372 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 LZTS3O60299 673 aaPredicted RBP10.14□□□□□ -0.79
VPS28-204ENST00000526054 C1QL1O75973 258 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 TCP1P17987 556 aaKnown RBP10.14□□□□□ -0.79
VPS28-204ENST00000526054 NFKB1P19838 968 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 IGFALSP35858 605 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 MMP12P39900 470 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 TNNT3P45378 269 aaPredicted RBP10.14□□□□□ -0.79
VPS28-204ENST00000526054 LSSP48449 732 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 UCNP55089 124 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 TMPRSS3P57727 454 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 ERVPABLB-1P60509 514 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 RPL26P61254 145 aaKnown RBP10.14□□□□□ -0.79
VPS28-204ENST00000526054 SKOR1P84550 965 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 EIF2B5Q13144 721 aaKnown RBP10.14□□□□□ -0.79
VPS28-204ENST00000526054 NR0B2Q15466 257 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 ISXQ2M1V0 245 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 TMEM52BQ4KMG9 183 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 PRRT3Q5FWE3 981 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 C3orf38Q5JPI3 329 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 CRTC1Q6UUV9 634 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 USP45Q70EL2 814 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 DPPA4Q7L190 304 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 ZSWIM9Q86XI8 627 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 PHACTR4Q8IZ21 702 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 LSM14AQ8ND56 463 aaKnown RBP10.14□□□□□ -0.79
VPS28-204ENST00000526054 KCNE4Q8WWG9 221 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 ASB12Q8WXK4 309 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 ATG4AQ8WYN0 398 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 HIC2Q96JB3 615 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 SPATA13Q96N96 652 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 FCRL5Q96RD9 977 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 OSBPL9Q96SU4 736 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 RBM15Q96T37 977 aaKnown RBP eCLIP10.14□□□□□ -0.79
VPS28-204ENST00000526054 NAPGQ99747 312 aaPredicted RBP10.14□□□□□ -0.79
VPS28-204ENST00000526054 LRRC61Q9BV99 259 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 C1QTNF7Q9BXJ2 289 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 ADGRE3Q9BY15 652 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 GBA3Q9H227 469 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 C10orf88Q9H8K7 445 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 PCDH9Q9HC56 1237 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 THSD1Q9NS62 852 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 HOMER3Q9NSC5 361 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 SPASTQ9UBP0 616 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 DNPEPQ9ULA0 475 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 SNX12Q9UMY4 172 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 RPL26L1Q9UNX3 145 aaKnown RBP10.14□□□□□ -0.79
VPS28-204ENST00000526054 SATB2Q9UPW6 733 aa10.14□□□□□ -0.79
VPS28-204ENST00000526054 CTAGE9A4FU28 777 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 EME2A4GXA9 379 aaPredicted RBP10.13□□□□□ -0.79
VPS28-204ENST00000526054 GOLGA6CA6NDK9 693 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 GOLGA6BA6NDN3 693 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 PGRMC1O00264 195 aaKnown RBP10.13□□□□□ -0.79
VPS28-204ENST00000526054 TPP1O14773 563 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 FZD6O60353 706 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 ANXA9O76027 345 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 TM7SF2O76062 418 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 PRKCGP05129 697 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 MMP2P08253 660 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 GOLGA6DP0CG33 693 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 VIPR1P32241 457 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 CD68P34810 354 aaPredicted RBP10.13□□□□□ -0.79
VPS28-204ENST00000526054 RPIAP49247 311 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 PRPSAP1Q14558 356 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 P3H1Q32P28 736 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 ANKRD20A2Q5SQ80 823 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 ANKRD20A1Q5TYW2 823 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 ANKRD20A3Q5VUR7 823 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 CCDC70Q6NSX1 233 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 DRICH1Q6PGQ1 229 aaPredicted RBP10.13□□□□□ -0.79
VPS28-204ENST00000526054 MACC1Q6ZN28 852 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 RBM44Q6ZP01 1051 aaKnown RBP10.13□□□□□ -0.79
VPS28-204ENST00000526054 ARHGEF18Q6ZSZ5 1173 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 RASGEF1CQ8N431 466 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 LPCAT1Q8NF37 534 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 PIH1D2Q8WWB5 315 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 C1orf54Q8WWF1 131 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 GLMNQ92990 594 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 NAT6Q93015 286 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 CENPTQ96BT3 561 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 LRRC45Q96CN5 670 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 ATXN7L3BQ96GX2 97 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 TBATAQ96M53 351 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms