RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MORC4Q8TE76 937 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 PPM1EQ8WY54 764 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 TRIM44Q96DX7 344 aaPredicted RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 RRP36Q96EU6 259 aaKnown RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 GRAMD2BQ96HH9 432 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 CMKLR1Q99788 373 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 C1QTNF5Q9BXJ0 243 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 MMP28Q9H239 520 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 VEZTQ9HBM0 779 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 RALYQ9UKM9 306 aaKnown RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 INTS6Q9UL03 887 aaKnown RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 MKLN1Q9UL63 735 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 CAMK2AQ9UQM7 478 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 CRYL1Q9Y2S2 319 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 KDM3AQ9Y4C1 1321 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 PRR23AA6NEV1 266 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 VCYO14598 125 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 TGFB1I1O43294 461 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 MYOD1P15172 320 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 KCNA5P22460 613 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 MARK3P27448 753 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 BDKRB2P30411 391 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 ICAM3P32942 547 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 CPOXP36551 454 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 TMPOP42166 694 aaKnown RBP3.93□□□□□ -1.78
CD44-217ENST00000525348 PAFAH1B1P43034 410 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 RAD23BP54727 409 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 FOXD4Q12950 439 aaPredicted RBP3.93□□□□□ -1.78
CD44-217ENST00000525348 STXBP5Q5T5C0 1151 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 METTL2BQ6P1Q9 378 aaKnown RBP3.93□□□□□ -1.78
CD44-217ENST00000525348 KCTD18Q6PI47 426 aaPredicted RBP3.93□□□□□ -1.78
CD44-217ENST00000525348 KRBA2Q6ZNG9 492 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 SMAP1Q8IYB5 467 aaPredicted RBP3.93□□□□□ -1.78
CD44-217ENST00000525348 NGEFQ8N5V2 710 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 LMNTD1Q8N9Z9 388 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 IL17RCQ8NAC3 791 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 METTL2AQ96IZ6 378 aaKnown RBP3.93□□□□□ -1.78
CD44-217ENST00000525348 TSPAN18Q96SJ8 248 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 SH3GL2Q99962 352 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 PLEKHA5Q9HAU0 1116 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 SEBOXQ9HB31 216 aaPredicted RBP3.93□□□□□ -1.78
CD44-217ENST00000525348 ZFP57Q9NU63 452 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 ABI3Q9P2A4 366 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 PADI1Q9ULC6 663 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 PADI3Q9ULW8 664 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 ARHGAP26Q9UNA1 814 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 ERVK-11Q9UQG0 969 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 SMARCA2P51531 1590 aa3.93□□□□□ -1.78
CD44-217ENST00000525348 NESP48681 1621 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 MYO15BQ96JP2 1530 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 CCDC196A0A1B0GTZ2 297 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 VGLL3A8MV65 326 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 ERVV-2B6SEH9 535 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 TCERG1O14776 1098 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 EIF3JO75822 258 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 GAS8-AS1O95177 125 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 HOXB5P09067 269 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 DDX5P17844 614 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 HARS2P49590 506 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 ISL1P61371 349 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 NEXNQ0ZGT2 675 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 KRT24Q2M2I5 525 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 GGNBP1Q5YKI7 109 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 DUS1LQ6P1R4 473 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 CASC1Q6TDU7 716 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 DCUN1D3Q8IWE4 304 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 CCDC13Q8IYE1 715 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 BEST3Q8N1M1 668 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 PCDH20Q8N6Y1 951 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 PSPC1Q8WXF1 523 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 ANP32BQ92688 251 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 ZUFSPQ96AP4 578 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 FEM1CQ96JP0 617 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 PGLYRP2Q96PD5 576 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 IFIH1Q9BYX4 1025 aaKnown RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 KIF9Q9HAQ2 790 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 SLC13A4Q9UKG4 626 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 TTC7AQ9ULT0 858 aaPredicted RBP3.92□□□□□ -1.78
CD44-217ENST00000525348 UTYO14607 1347 aa3.92□□□□□ -1.78
CD44-217ENST00000525348 GOLGA6L9A6NEM1 432 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 A6NLC8 198 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 LRRC53A6NM62 1247 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 AKR1B15C9JRZ8 316 aaPredicted RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 C16orf97H3BN30 126 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 P2RY10O00398 339 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 CRYAAP02489 173 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 XBP1P17861 261 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 PIP4K2AP48426 406 aaPredicted RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 CTCFP49711 727 aaPredicted RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 SYT16Q17RD7 645 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 USP41Q3LFD5 358 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 CXorf66Q5JRM2 361 aaPredicted RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 GPATCH4Q5T3I0 446 aaKnown RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 ACAD10Q6JQN1 1059 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 INO80CQ6PI98 192 aaPredicted RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 GDPD4Q6W3E5 623 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 SMC5Q8IY18 1101 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.91□□□□□ -1.78
CD44-217ENST00000525348 CNTROBQ8N137 903 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 ZBTB8BQ8NAP8 495 aaPredicted RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms