RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 MESP2Q0VG99 397 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 SFSWAPQ12872 951 aaKnown RBP15.96■□□□□ 0.15
NUP54-214ENST00000514307 ENPP2Q13822 863 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 SMAD2Q15796 467 aaKnown RBP15.96■□□□□ 0.15
NUP54-214ENST00000514307 TYSND1Q2T9J0 566 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 FAM45BPQ6NSW5 357 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 CNSTQ6PJW8 725 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 SNX20Q7Z614 316 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 ZSWIM9Q86XI8 627 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 ZNF513Q8N8E2 541 aaPredicted RBP15.96■□□□□ 0.15
NUP54-214ENST00000514307 GPATCH11Q8N954 259 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 FAM45AQ8TCE6 357 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 CKAP2Q8WWK9 683 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 PPM1EQ8WY54 764 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 VOPP1Q96AW1 172 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 ATXN7L3BQ96GX2 97 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 SMIM14Q96QK8 99 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 MTG2Q9H4K7 406 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 CCDC134Q9H6E4 229 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 FBRSQ9HAH7 460 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 MARCH4Q9P2E8 410 aaPredicted RBP15.96■□□□□ 0.15
NUP54-214ENST00000514307 B4GALT6Q9UBX8 382 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 GLYATL1P3A0A0U1RQE8 302 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 OR51F1A6NGY5 319 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 NPIPB15A6NHN6 443 aaPredicted RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 A8MX80 341 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 K7EQS6 105 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 SRP72O76094 671 aaKnown RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 CTSLP07711 333 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 HLA-EP13747 358 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 ZNF7P17097 686 aaPredicted RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 NTSR1P30989 418 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 CTHP32929 405 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 SLC26A3P40879 764 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 SKIV2L2P42285 1042 aaKnown RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 IL12RB1P42701 662 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 MAGEA12P43365 314 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 NEK3P51956 506 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 KPNA2P52292 529 aaKnown RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 MRPS21P82921 87 aaKnown RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 XIAPP98170 497 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 PDE1CQ14123 709 aaPredicted RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 STARD3Q14849 445 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 CCDC153Q494R4 210 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 FBXO43Q4G163 708 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 LRRC66Q68CR7 880 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 TTC19Q6DKK2 380 aaPredicted RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 LVRNQ6Q4G3 990 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 DPPA4Q7L190 304 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 NRSN1Q8IZ57 195 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 SREK1Q8WXA9 508 aaKnown RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 ULK4Q96C45 1275 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 MAGEB18Q96M61 343 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 PLEKHG4BQ96PX9 1271 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 OMDQ99983 421 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 HDAC8Q9BY41 377 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 EPN3Q9H201 632 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 ASB8Q9H765 288 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 FBRSL1Q9HCM7 1045 aaKnown RBP15.95■□□□□ 0.14
NUP54-214ENST00000514307 PCDH12Q9NPG4 1184 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 IL26Q9NPH9 171 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 PCMTD2Q9NV79 361 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 KCTD5Q9NXV2 234 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 PIAS3Q9Y6X2 628 aa15.95■□□□□ 0.14
NUP54-214ENST00000514307 F8W8V4 182 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 PSMD11O00231 422 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 BIRC5O15392 142 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 ASMTLO95671 621 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 PYGLP06737 847 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 BPIP17213 487 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 FOXN2P32314 431 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 SOX9P48436 509 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 SPINT3P49223 89 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 ADARP55265 1226 aaKnown RBP15.94■□□□□ 0.14
NUP54-214ENST00000514307 CAMK2GQ13555 558 aaPredicted RBP15.94■□□□□ 0.14
NUP54-214ENST00000514307 TDGQ13569 410 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 PEX6Q13608 980 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 ITGA9Q13797 1035 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 PTPRRQ15256 657 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 TSNAXIP1Q2TAA8 658 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 HECTD2Q5U5R9 776 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 EGFLAMQ63HQ2 1017 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 UGT3A1Q6NUS8 523 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 TBC1D1Q86TI0 1168 aaPredicted RBP15.94■□□□□ 0.14
NUP54-214ENST00000514307 SLC41A1Q8IVJ1 513 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 ZNF366Q8N895 744 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 EID2BQ96D98 161 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 FAM83DQ9H4H8 585 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 POPDC3Q9HBV1 291 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 SYTL2Q9HCH5 934 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 CACNA2D2Q9NY47 1150 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 MID2Q9UJV3 735 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 RUVBL2Q9Y230 463 aaKnown RBP15.94■□□□□ 0.14
NUP54-214ENST00000514307 CRYL1Q9Y2S2 319 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 PCDHB1Q9Y5F3 818 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 C2orf16Q68DN1 1984 aa15.94■□□□□ 0.14
NUP54-214ENST00000514307 TRANK1O15050 2925 aa15.93■□□□□ 0.14
NUP54-214ENST00000514307 H0Y858 1186 aa15.93■□□□□ 0.14
NUP54-214ENST00000514307 H3BMM5 538 aa15.93■□□□□ 0.14
NUP54-214ENST00000514307 MAN2B1O00754 1011 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms