RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 IL4RP24394 825 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 ALDH4A1P30038 563 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 PBX1P40424 430 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 GARSP41250 739 aaKnown RBP11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 ACTR1BP42025 376 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 ACTR1AP61163 376 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 FANCCQ00597 558 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 DSC2Q02487 901 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 DPTQ07507 201 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 GALNT2Q10471 571 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 BIRC2Q13490 618 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 NR1D2Q14995 579 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 NFKBIBQ15653 356 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 NCBP2-AS2Q69YL0 99 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 ADAMTSL4Q6UY14 1074 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 USP53Q70EK8 1073 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 TRIM74Q86UV6 250 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 VASH2Q86V25 355 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 CPNE8Q86YQ8 564 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 NAGSQ8N159 534 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 NDUFAF2Q8N183 169 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 FAM71BQ8TC56 605 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 CPLX3Q8WVH0 158 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 SYN2Q92777 582 aaPredicted RBP11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 AP2M1Q96CW1 435 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 OR2M4Q96R27 311 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 NUDT22Q9BRQ3 303 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 POLR1EQ9GZS1 481 aaKnown RBP11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 CDH19Q9H159 772 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 ABCG8Q9H221 673 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 CBX8Q9HC52 389 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 AKAP7Q9P0M2 348 aaPredicted RBP11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 TMEM98Q9Y2Y6 226 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 PPIL1Q9Y3C6 166 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 PLEKHM1Q9Y4G2 1056 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 TTLL3Q9Y4R7 772 aa11.5□□□□□ -0.57
HMGCS1-204ENST00000507293 AHCTF1Q8WYP5 2266 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 ZNF462Q96JM2 2506 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 A0A0J9YYE9 177 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 B8ZZF3 427 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 MYO1FO00160 1098 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 TRBC1P01850 177 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 CCL4P13236 92 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 CD1CP29017 333 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 ARSEP51690 589 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 EPHB1P54762 984 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 ZBED6P86452 979 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 DPYSL3Q14195 570 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 IHHQ14623 411 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 PAFAH1B3Q15102 231 aaKnown RBP11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 HADHQ16836 314 aaKnown RBP11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 MANEAQ5SRI9 462 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 CCDC122Q5T0U0 273 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 TIGD7Q6NT04 549 aaPredicted RBP11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 ZNF574Q6ZN55 896 aaPredicted RBP11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 MARK2Q7KZI7 788 aaKnown RBP11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 LUZP1Q86V48 1076 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 LRRC49Q8IUZ0 686 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 RCBTB1Q8NDN9 531 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 ZNF564Q8TBZ8 553 aaPredicted RBP11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 MAML1Q92585 1016 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 SCAMP4Q969E2 229 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 SGF29Q96ES7 293 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 SCARF2Q96GP6 870 aaPredicted RBP11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 CCDC74BQ96LY2 380 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 AGAP2Q99490 1192 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 TDRD1Q9BXT4 1180 aaKnown RBP11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 SEPT10Q9P0V9 454 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 CHKBQ9Y259 395 aa11.49□□□□□ -0.57
HMGCS1-204ENST00000507293 IGHV5-10-1A0A0J9YXX1 117 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 HGSO14964 777 aaPredicted RBP11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 MATN3O15232 486 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 PPM1DO15297 605 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 INPP4BO15327 924 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 ZW10O43264 779 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 ZNF30P17039 623 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 WT1P19544 449 aaPredicted RBP11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 CSF2RBP32927 897 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 GPR3P46089 330 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 STC1P52823 247 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 UBASH3AP57075 661 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 TPM4P67936 248 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 PTSQ03393 145 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 PEX6Q13608 980 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 IFI16Q16666 785 aaKnown RBP11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 CLPPQ16740 277 aaPredicted RBP11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 LINC00303Q3SY05 128 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 ATP13A4Q4VNC1 1196 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 PYCR3Q53H96 274 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 NKAIN2Q5VXU1 208 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 ALG1LQ6GMV1 187 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 ALKBH5Q6P6C2 394 aaKnown RBP11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 ZNF765Q7L2R6 523 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 EXD3Q8N9H8 876 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 LPCAT1Q8NF37 534 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 LRRN4Q8WUT4 740 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 ZNF670Q9BS34 389 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 RIOK2Q9BVS4 552 aaKnown RBP11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 RBM22Q9NW64 420 aaKnown RBP eCLIP11.48□□□□□ -0.574e-23■■■■□ 23.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms