RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 BCL10O95999 233 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 FTH1P02794 183 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 NOGQ13253 232 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 PCLAFQ15004 111 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 NEDD8Q15843 81 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 PAGE2BQ5JRK9 111 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 CNSTQ6PJW8 725 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 CYS1Q717R9 158 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 AMIGO2Q86SJ2 522 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 LDB1Q86U70 411 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 FBXO30Q8TB52 745 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 ELMO1Q92556 727 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 PLEKHA8Q96JA3 519 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 ZNF599Q96NL3 588 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 GPR21Q99679 349 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 CEP44Q9C0F1 390 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 EPB41L4BQ9H329 900 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 MFSD1Q9H3U5 465 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 MOXD2PA6NHM9 499 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 GPR32O75388 356 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 CHRNGP07510 517 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 LYNP07948 512 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 UROSP10746 265 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 TRPC1P48995 793 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 ROR2Q01974 943 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 EML3Q32P44 896 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 CLEC6AQ6EIG7 209 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 TRMT11Q7Z4G4 463 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 ZC3HC1Q86WB0 502 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 TBC1D21Q8IYX1 336 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 RTP4Q96DX8 246 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 CLK4Q9HAZ1 481 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 ZNF358Q9NW07 568 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC7A8Q9UHI5 535 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 WASF2Q9Y6W5 498 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 CAPN8A6NHC0 703 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 NT5C1B-RDH14C9J2C7 533 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 FFAR3O14843 346 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 GPR42O15529 346 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 PEX1O43933 1283 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 C1RP00736 705 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 SP100P23497 879 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 KRT20P35900 424 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 GPR15P49685 360 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 POLR2JP52435 117 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 IRF8Q02556 426 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 HSPA14Q0VDF9 509 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 PEX6Q13608 980 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 RFTN1Q14699 578 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 SCIMPQ6UWF3 145 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 DNAJC1Q96KC8 554 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 ZFYVE1Q9HBF4 777 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 ASAH2Q9NR71 780 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 CORO2BQ9UQ03 480 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 DMTF1Q9Y222 760 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 LZTS1Q9Y250 596 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 A0A0U1RQF3 1178 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 CNMDO75829 334 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 ELNP15502 786 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 WEE1P30291 646 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 GRK3P35626 688 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 NEK2P51955 445 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 SETMARQ53H47 684 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 GDF6Q6KF10 455 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 ZNF621Q6ZSS3 439 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 NELL1Q92832 810 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 KIFC1Q9BW19 673 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 NUSAP1Q9BXS6 441 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 RPS6KA6Q9UK32 745 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 POLR3HQ9Y535 204 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 NRP1O14786 923 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 RPN2P04844 631 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 DAB2P98082 770 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 TRIM16LQ309B1 348 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 EPGNQ6UW88 154 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 TCAIMQ8N3R3 496 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 COL5A3P25940 1745 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 SNTNA6NMZ2 147 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC38A8A6NNN8 435 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 GPC1P35052 558 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 MSX2P35548 267 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 PCYT1AP49585 367 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 CDC16Q13042 620 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 NPAS4Q8IUM7 802 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 LPGAT1Q92604 370 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 TFB2MQ9H5Q4 396 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 CRTAC1Q9NQ79 661 aa10.74□□□□□ -0.69
LIMCH1-205ENST00000503057 RBM47A0AV96 593 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC9A3R1O14745 358 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ITGAXP20702 1163 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 SOX6P35712 828 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 CHRNA4P43681 627 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 RALGDSQ12967 914 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 TRIM25Q14258 630 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 RBM44Q6ZP01 1051 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 C11orf96Q7Z7L8 435 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 SPPL2AQ8TCT8 520 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ITCHQ96J02 903 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 TPD52L3Q96J77 140 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ZFP14Q9HCL3 533 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms