RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CDC25CP30307 473 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 OR1D2P34982 312 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 SCNN1BP51168 640 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 CLCN2P51788 898 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 PLK1P53350 603 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 PEX6Q13608 980 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 TRIP10Q15642 601 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 UNC50Q53HI1 259 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 UGT3A1Q6NUS8 523 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 PRMT9Q6P2P2 845 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 ZNF549Q6P9A3 640 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 TMEM207Q6UWW9 146 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 SLC39A5Q6ZMH5 540 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 LDB1Q86U70 411 aaPredicted RBP11.95□□□□□ -0.5
NUP54-202ENST00000502850 PIM3Q86V86 326 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 HOMEZQ8IX15 550 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 KBTBD2Q8IY47 623 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 RNF168Q8IYW5 571 aaPredicted RBP11.95□□□□□ -0.5
NUP54-202ENST00000502850 STK40Q8N2I9 435 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 PQLC1Q8N2U9 271 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 PTGR2Q8N8N7 351 aaPredicted RBP11.95□□□□□ -0.5
NUP54-202ENST00000502850 PCYOX1LQ8NBM8 494 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 ICA1LQ8NDH6 482 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 OR13C4Q8NGS5 318 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 ZNF461Q8TAF7 563 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 GDPD5Q8WTR4 605 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 LPGAT1Q92604 370 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.95□□□□□ -0.5
NUP54-202ENST00000502850 MOCOSQ96EN8 888 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 LRGUKQ96M69 825 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 PRICKLE1Q96MT3 831 aaPredicted RBP11.95□□□□□ -0.5
NUP54-202ENST00000502850 C19orf43Q9BQ61 176 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 MUC3BQ9H195 1237 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 ACSS2Q9NR19 701 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 STOML2Q9UJZ1 356 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 KCTD3Q9Y597 815 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 PLXNA4Q9HCM2 1894 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 UBA6A0AVT1 1052 aaPredicted RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 TTC24A2A3L6 582 aaPredicted RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 NT5C1B-RDH14C9J2C7 533 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 STX16-NPEPL1H3BU86 382 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 CCL22O00626 93 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 STX16O14662 325 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 AZIN1O14977 448 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 SNRPB2P08579 225 aaKnown RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 HSPA13P48723 471 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 CLCN4P51793 760 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 THOP1P52888 689 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 TRAP1Q12931 704 aaKnown RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 LCP2Q13094 533 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 GPNMBQ14956 572 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 GEN1Q17RS7 908 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 INO80DQ53TQ3 878 aaPredicted RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 FBXO39Q8N4B4 442 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 HJURPQ8NCD3 748 aaPredicted RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 OR52K2Q8NGK3 314 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 GATA6Q92908 595 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 PTERQ96BW5 349 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 ROPN1LQ96C74 230 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 ASB9Q96DX5 294 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 MYEOVQ96EZ4 313 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 ATOH8Q96SQ7 321 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 CYP2S1Q96SQ9 504 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 CCT7Q99832 543 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 LBHD1Q9BQE6 289 aaPredicted RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 NUSAP1Q9BXS6 441 aaKnown RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 SUDS3Q9H7L9 328 aaPredicted RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 RNF112Q9ULX5 631 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 FIS1Q9Y3D6 152 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 RAI2Q9Y5P3 530 aa11.94□□□□□ -0.5
NUP54-202ENST00000502850 OAS3Q9Y6K5 1087 aaKnown RBP11.94□□□□□ -0.5
NUP54-202ENST00000502850 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 H3BNX3 289 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 H7C0S8 307 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 CBX4O00257 560 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 CFLARO15519 480 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 ABLIM3O94929 683 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 GJB5O95377 273 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 CHEK2O96017 543 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SOD2P04179 222 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 UQCRBP14927 111 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 HMGA1P17096 107 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 ADARP55265 1226 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 PSME3P61289 254 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 RPS24P62847 133 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 MED21Q13503 144 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SEMA3AQ14563 771 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SPATS1Q496A3 300 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 PABPC1LQ4VXU2 614 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 AGKQ53H12 422 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SAMD4BQ5PRF9 694 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 OGFRL1Q5TC84 451 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 ANKS6Q68DC2 871 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 REP15Q6BDI9 236 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 LARP4Q71RC2 724 aaKnown RBP eCLIP11.93□□□□□ -0.5
NUP54-202ENST00000502850 TAS1R1Q7RTX1 841 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 TMEM173Q86WV6 379 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 RYBPQ8N488 228 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 HIPK4Q8NE63 616 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 LPCAT1Q8NF37 534 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms