RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ASB16Q96NS5 453 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 P2RY13Q9BPV8 354 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 ZDHHC3Q9NYG2 299 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 SLC27A6Q9Y2P4 619 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 CRYL1Q9Y2S2 319 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 ARL5AQ9Y689 179 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 ZCWPW2A0A1B0GU75 182 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 A0A1W2PPC1 479 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 PHGDHO43175 533 aaKnown RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 VPS4BO75351 444 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 AP2A2O94973 939 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 TRIM16O95361 564 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 GSTM1P09488 218 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 DDX5P17844 614 aaKnown RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 SLC1A6P48664 564 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 STC1P52823 247 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 GSTM4Q03013 218 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 TRAF2Q12933 501 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 LRRC32Q14392 662 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 KRT33BQ14525 404 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 ZYG11AQ6WRX3 759 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 RGS9BPQ6ZS82 235 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 Q6ZVU0 165 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 PHYKPLQ8IUZ5 450 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 RAVER1Q8IY67 606 aaKnown RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 ITFG1Q8TB96 612 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 ATL1Q8WXF7 558 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 C7orf26Q96N11 449 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 FAM210AQ96ND0 272 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 LRRC3Q9BY71 257 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 CXorf56Q9H5V9 222 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 TREX1Q9NSU2 369 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 KCNK4Q9NYG8 393 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 WWOXQ9NZC7 414 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 COL4A6Q14031 1691 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 KLF11O14901 512 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 TULP3O75386 442 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 CCDC166P0CW27 439 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 CBSLP0DN79 551 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 CBSP35520 551 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 GPR1P46091 355 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 VASPP50552 380 aaPredicted RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 SEC24CP53992 1094 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 FBXO43Q4G163 708 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 FAM151BQ6UXP7 276 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 TBC1D19Q8N5T2 526 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 SHDQ96IW2 340 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 DKK3Q9UBP4 350 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 SCML1Q9UN30 329 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 SORCS3Q9UPU3 1222 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 CXorf49A8MYA2 514 aaPredicted RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 MAN2B1O00754 1011 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 PLIN3O60664 434 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 HMGCLP35914 325 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 MPP1Q00013 466 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 BIRC2Q13490 618 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ANKS6Q68DC2 871 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 FAM9CQ8IZT9 166 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 TMIEQ8NEW7 156 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 KCNV2Q8TDN2 545 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 SERAC1Q96JX3 654 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 CNDP1Q96KN2 507 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ZFRQ96KR1 1074 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 PLEKHG4BQ96PX9 1271 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 TFB2MQ9H5Q4 396 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 TRPV4Q9HBA0 871 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 BPIFA1Q9NP55 256 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 NPHS2Q9NP85 383 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 MRPL40Q9NQ50 206 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 CFAP73A6NFT4 308 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 I6L893 689 aaPredicted RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 SIN3BO75182 1162 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 PIGNO95427 931 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 KELP23276 732 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 PSMD8P48556 350 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 NUMBP49757 651 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 FUT11Q495W5 492 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ARSIQ5FYB1 569 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 TMEM184AQ6ZMB5 413 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 TMEM150AQ86TG1 271 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 SERPINA9Q86WD7 417 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 KLHDC8BQ8IXV7 354 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 TERB1Q8NA31 727 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 OR56A4Q8NGH8 313 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 MCOLN3Q8TDD5 553 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 FCRL3Q96P31 734 aaPredicted RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 AARSD1Q9BTE6 412 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 SPATS2LQ9NUQ6 558 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 NUDT4Q9NZJ9 180 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 SPECC1L-ADORA2AF8WAN1 911 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ZMPSTE24O75844 475 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 PCSK2P16519 638 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 GLDCP23378 1020 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 HMOX2P30519 316 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 TNFRSF4P43489 277 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ABCE1P61221 599 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 HSF5Q4G112 596 aaPredicted RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 TRPM8Q7Z2W7 1104 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 LYSMD3Q7Z3D4 306 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 GPSM1Q86YR5 675 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms