RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 SNX16P57768 344 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 SRP54P61011 504 aaKnown RBP13.19□□□□□ -0.3
HDAC3-213ENST00000492506 PTK2Q05397 1052 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 C16orf72Q14CZ0 275 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 LRRC14Q15048 493 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 POLD3Q15054 466 aaPredicted RBP13.19□□□□□ -0.3
HDAC3-213ENST00000492506 TMEM52BQ4KMG9 183 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 RAB6CQ53S08 254 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 TTMPQ5BVD1 217 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 AGBL2Q5U5Z8 902 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 GKAP1Q5VSY0 366 aaPredicted RBP13.19□□□□□ -0.3
HDAC3-213ENST00000492506 ENPP7Q6UWV6 458 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 RD3Q7Z3Z2 195 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 XYLT1Q86Y38 959 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 PTRH1Q86Y79 214 aaKnown RBP13.19□□□□□ -0.3
HDAC3-213ENST00000492506 ZNF564Q8TBZ8 553 aaPredicted RBP13.19□□□□□ -0.3
HDAC3-213ENST00000492506 CXorf40AQ8TE69 158 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 PDXPQ96GD0 296 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 CMKLR1Q99788 373 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 APOOQ9BUR5 198 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 RAB6CQ9H0N0 254 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 SEMA6CQ9H3T2 930 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 SIX2Q9NPC8 291 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 ABHD10Q9NUJ1 306 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 DKK3Q9UBP4 350 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 TMEM59LQ9UK28 342 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 COQ6Q9Y2Z9 468 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 PCDHB11Q9Y5F2 797 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 MYO9AB2RTY4 2548 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 UNC79Q9P2D8 2635 aa13.19□□□□□ -0.3
HDAC3-213ENST00000492506 ICE1Q9Y2F5 2266 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 BICDL2A1A5D9 508 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 FOXN3O00409 490 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 KRT9P35527 623 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 ETFBP38117 255 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 MAPK10P53779 464 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 GEMIN4P57678 1058 aaKnown RBP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 MRPS35P82673 323 aaKnown RBP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 FOXK1P85037 733 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 NRG1Q02297 640 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 HLTFQ14527 1009 aaKnown RBP eCLIP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 ITIH4Q14624 930 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 INPP5AQ14642 412 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 AGERQ15109 404 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 IGFBP7Q16270 282 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 SKIDA1Q1XH10 827 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 CDKAL1Q5VV42 579 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 SMYD5Q6GMV2 418 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 FAM131BQ86XD5 332 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 LMNTD2Q8IXW0 634 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 SPDYE1Q8NFV5 336 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 NKD1Q969G9 470 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 FUBP1Q96AE4 644 aaKnown RBP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 CFAP57Q96MR6 1250 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 TSC22D3Q99576 134 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 MAGEB5Q9BZ81 275 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 TTYH3Q9C0H2 523 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 SEPT3Q9UH03 358 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 LIMA1Q9UHB6 759 aaKnown RBP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 MFHAS1Q9Y4C4 1052 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 OR1A2Q9Y585 309 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 EPN1Q9Y6I3 576 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-213ENST00000492506 DGKBQ9Y6T7 804 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 NOTCH2Q04721 2471 aa13.18□□□□□ -0.3
HDAC3-213ENST00000492506 A6NHS1 94 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 FAM72CH0Y354 149 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 KDELR3O43731 214 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 NDUFA10O95299 355 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 CCL4P13236 92 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 RHOQP17081 205 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 PON1P27169 355 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 HTR1BP28222 390 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 PAFAH1B1P43034 410 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 MAPKAPK2P49137 400 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 POLE2P56282 527 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 ELF3P78545 371 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-213ENST00000492506 B4GALNT1Q00973 533 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 LBRQ14739 615 aaKnown RBP13.17□□□□□ -0.3
HDAC3-213ENST00000492506 C14orf28Q4W4Y0 310 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 C2CD6Q53TS8 623 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 FAM102AQ5T9C2 384 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-213ENST00000492506 FAM72AQ5TYM5 149 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 FAM72DQ6L9T8 149 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 BORAQ6PGQ7 559 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 FAM72BQ86X60 149 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 GBP7Q8N8V2 638 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-213ENST00000492506 CCDC63Q8NA47 563 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 NETO2Q8NC67 525 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 NSMCE1Q8WV22 266 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 JPH3Q8WXH2 748 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-213ENST00000492506 PMEPA1Q969W9 287 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 C18orf8Q96DM3 657 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 WDR92Q96MX6 357 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 MAGEH1Q9H213 219 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 RETREG1Q9H6L5 497 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 TMEM248Q9NWD8 314 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 ZFATQ9P243 1243 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 LRIT1Q9P2V4 623 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 KLQ9UEF7 1012 aa13.17□□□□□ -0.3
HDAC3-213ENST00000492506 OR12D3Q9UGF7 316 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms