RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 SLC25A14O95258 325 aaPredicted RBP13.21□□□□□ -0.3
HMGN1-216ENST00000486741 FYNP06241 537 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 DOK6Q6PKX4 331 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 PAOXQ6QHF9 649 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 KIAA0408Q6ZU52 694 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 FRMD7Q6ZUT3 714 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 TRMT11Q7Z4G4 463 aaKnown RBP13.21□□□□□ -0.3
HMGN1-216ENST00000486741 PTCD2Q8WV60 388 aaKnown RBP13.21□□□□□ -0.3
HMGN1-216ENST00000486741 CDKN2AIPNLQ96HQ2 116 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 C8orf48Q96LL4 319 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 GPR22Q99680 433 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 MTIF3Q9H2K0 278 aaKnown RBP13.21□□□□□ -0.3
HMGN1-216ENST00000486741 STN1Q9H668 368 aaKnown RBP13.21□□□□□ -0.3
HMGN1-216ENST00000486741 CERS4Q9HA82 394 aa13.21□□□□□ -0.3
HMGN1-216ENST00000486741 TMCC1O94876 653 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 PRAMEF1O95521 474 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 MT-ND1P03886 318 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 ATP5BP06576 529 aaKnown RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 PSMC3P17980 439 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 GLDCP23378 1020 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 AASDHQ4L235 1098 aaPredicted RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 FBXW8Q8N3Y1 598 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 ARNTL2Q8WYA1 636 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 NMD3Q96D46 503 aaKnown RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 RTP4Q96DX8 246 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 TMEM79Q9BSE2 394 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 EMILIN2Q9BXX0 1053 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 OSGEPL1Q9H4B0 414 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 TMEM30AQ9NV96 361 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 DNAJC28Q9NX36 388 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 KIF17Q9P2E2 1029 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 YIPF1Q9Y548 306 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 GNG14A0A1W2PPG7 69 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 CAPN8A6NHC0 703 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 TRAFD1O14545 582 aaPredicted RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 ABCB1P08183 1280 aaPredicted RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 HSPA1AP0DMV8 641 aaKnown RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 HSPA1BP0DMV9 641 aaKnown RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 POLR2EP19388 210 aaKnown RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 MAPKAPK2P49137 400 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 RPL38P63173 70 aaKnown RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 SAMD4BQ5PRF9 694 aaKnown RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 GPRIN3Q6ZVF9 776 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 CEP97Q8IW35 865 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 CLDN19Q8N6F1 224 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 PPP2R3CQ969Q6 453 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 C19orf60Q96EN9 201 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 MRGPRX2Q96LB1 330 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 WDR83Q9BRX9 315 aaKnown RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 POLG2Q9UHN1 485 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 EVPLLA8MZ36 301 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 PGM3O95394 542 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 ZNF682O95780 498 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 MTA1Q13330 715 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 TTC33Q6PID6 262 aaPredicted RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 USP45Q70EL2 814 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 TMEM135Q86UB9 458 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 TMEM159Q96B96 161 aa13.2□□□□□ -0.3
HMGN1-216ENST00000486741 POLR3BQ9NW08 1133 aaPredicted RBP13.2□□□□□ -0.3
HMGN1-216ENST00000486741 A0A0J9YYE9 177 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ZNF487B1APH4 448 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ADH1AP07327 375 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 HOXB8P17481 243 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 HTR7P34969 479 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 CSKP41240 450 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ARSDP51689 593 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SMARCB1Q12824 385 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ABRQ12979 859 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SQLEQ14534 574 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ADGRF1Q5T601 910 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ACVR1CQ8NER5 493 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 CDK15Q96Q40 435 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SLC39A3Q9BRY0 314 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 KIFC1Q9BW19 673 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 PCDH10Q9P2E7 1040 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 AP4S1Q9Y587 144 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 NRP2O60462 931 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SNUPNO95149 360 aaKnown RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 KRT6AP02538 564 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 KRT6BP04259 564 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 CNPP09543 421 aaKnown RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 DGKAP23743 735 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 KRT6CP48668 564 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 HSPA7P48741 367 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 PHEXP78562 749 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 FAM43BQ6ZT52 329 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 STK40Q8N2I9 435 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ZNF366Q8N895 744 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 OR9I1Q8NGQ6 314 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 TWIST2Q8WVJ9 160 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SELENOMQ8WWX9 145 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ELMO1Q92556 727 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SLC7A6OSQ96CW6 309 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 PRPF18Q99633 342 aaKnown RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 HPS4Q9NQG7 708 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 CLIC5Q9NZA1 410 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 EIF2B4Q9UI10 523 aaKnown RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 MRPS23Q9Y3D9 190 aaKnown RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 A8MT66 165 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms