RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 DDX5P17844 614 aaKnown RBP3.81□□□□□ -1.8
VPS41-213ENST00000485955 IL15P40933 162 aaPredicted RBP3.81□□□□□ -1.8
VPS41-213ENST00000485955 GABRB2P47870 512 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 CRIP2P52943 208 aaPredicted RBP3.81□□□□□ -1.8
VPS41-213ENST00000485955 PHEXP78562 749 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 CCDC96Q2M329 555 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 ACCSLQ4AC99 568 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 C19orf48Q6RUI8 117 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 PQLC2Q6ZP29 291 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 SLC26A9Q7LBE3 791 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 TRMT1LQ7Z2T5 733 aaKnown RBP3.81□□□□□ -1.8
VPS41-213ENST00000485955 ZNF354CQ86Y25 554 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 KMT5CQ86Y97 462 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 KLHDC8BQ8IXV7 354 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 RNF113BQ8IZP6 322 aaKnown RBP3.81□□□□□ -1.8
VPS41-213ENST00000485955 CADM4Q8NFZ8 388 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 ST8SIA4Q92187 359 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 MTERF1Q99551 399 aaKnown RBP3.81□□□□□ -1.8
VPS41-213ENST00000485955 C1QTNF5Q9BXJ0 243 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 SLC25A18Q9H1K4 315 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 SEBOXQ9HB31 216 aaPredicted RBP3.81□□□□□ -1.8
VPS41-213ENST00000485955 VEZTQ9HBM0 779 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 PCDHB16Q9NRJ7 776 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 ABCF3Q9NUQ8 709 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 AMDHD2Q9Y303 409 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 OR2W1Q9Y3N9 320 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 LOXL2Q9Y4K0 774 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 CYP46A1Q9Y6A2 500 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 RB1CC1Q8TDY2 1594 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 USP17L23D6RBM5 183 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 FGF17O60258 216 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 RRM1P23921 792 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 CDAP32320 146 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 TIMP3P35625 211 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 CPOXP36551 454 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 PAFAH1B1P43034 410 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 PLA2G4FQ68DD2 849 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 TRNP1Q6NT89 227 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 ASB18Q6ZVZ8 466 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 EPHX4Q8IUS5 362 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 CCDC13Q8IYE1 715 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 CPXCR1Q8N123 301 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 BEST3Q8N1M1 668 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 ESX1Q8N693 406 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 PCDH20Q8N6Y1 951 aaKnown RBP3.8□□□□□ -1.8
VPS41-213ENST00000485955 OR5R1Q8NH85 324 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 ALG14Q96F25 216 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 USP44Q9H0E7 712 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 BRF2Q9HAW0 419 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 ZNF334Q9HCZ1 680 aaPredicted RBP3.8□□□□□ -1.8
VPS41-213ENST00000485955 SLC6A13Q9NSD5 602 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 INTS6Q9UL03 887 aaKnown RBP3.8□□□□□ -1.8
VPS41-213ENST00000485955 PADI3Q9ULW8 664 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 GAB2Q9UQC2 676 aa3.8□□□□□ -1.8
VPS41-213ENST00000485955 LRRFIP2Q9Y608 721 aaKnown RBP3.8□□□□□ -1.8
VPS41-213ENST00000485955 VCYO14598 125 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 CAPN9O14815 690 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 AMBPP02760 352 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 FGF5P12034 268 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 CD53P19397 219 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 ANOS1P23352 680 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 ABCD1P33897 745 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 GNL1P36915 607 aaPredicted RBP3.79□□□□□ -1.8
VPS41-213ENST00000485955 USP8P40818 1118 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 FMO5P49326 533 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 NEXNQ0ZGT2 675 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 DRAP1Q14919 205 aaPredicted RBP3.79□□□□□ -1.8
VPS41-213ENST00000485955 GSTA3Q16772 222 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 NFE4Q86UQ8 179 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 HEATR4Q86WZ0 1026 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 FOXP4Q8IVH2 680 aaPredicted RBP3.79□□□□□ -1.8
VPS41-213ENST00000485955 ACVR1CQ8NER5 493 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 DMBX1Q8NFW5 382 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 ORAI1Q96D31 301 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 SYT17Q9BSW7 474 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 PAIP1Q9H074 479 aaKnown RBP3.79□□□□□ -1.8
VPS41-213ENST00000485955 TAAR2Q9P1P5 351 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 CAPN7Q9Y6W3 813 aa3.79□□□□□ -1.8
VPS41-213ENST00000485955 EIF4G1Q04637 1599 aaKnown RBP3.79□□□□□ -1.8
VPS41-213ENST00000485955 THOC2Q8NI27 1593 aaKnown RBP3.79□□□□□ -1.8
VPS41-213ENST00000485955 KDM3AQ9Y4C1 1321 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 FAM237AA0A1B0GTK4 181 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 LRRC53A6NM62 1247 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 EGFP01133 1207 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 HOXB5P09067 269 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 PIP4K2AP48426 406 aaPredicted RBP3.78□□□□□ -1.8
VPS41-213ENST00000485955 CSNK2A1P68400 391 aaPredicted RBP3.78□□□□□ -1.8
VPS41-213ENST00000485955 GTF2H2Q13888 395 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 USP41Q3LFD5 358 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 C6orf141Q5SZD1 244 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 PMS2CLQ68D20 193 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 SIGIRRQ6IA17 410 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 GTF2H2CQ6P1K8 395 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 BRAT1Q6PJG6 821 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 RAD9BQ6WBX8 426 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 ZNF852Q6ZMS4 543 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 NRROSQ86YC3 692 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 CSNK2A3Q8NEV1 391 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 SLC24A4Q8NFF2 622 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms