RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ETNK1Q9HBU6 452 aa17.07■□□□□ 0.32
VIM-205ENST00000485947 ARFGAP3Q9NP61 516 aa17.07■□□□□ 0.32
VIM-205ENST00000485947 RBM22Q9NW64 420 aaKnown RBP eCLIP17.07■□□□□ 0.32
VIM-205ENST00000485947 GOLGA6AQ9NYA3 693 aa17.07■□□□□ 0.32
VIM-205ENST00000485947 RSPH14Q9UHP6 348 aa17.07■□□□□ 0.32
VIM-205ENST00000485947 ATP8A1Q9Y2Q0 1164 aa17.07■□□□□ 0.32
VIM-205ENST00000485947 NBEAQ8NFP9 2946 aa17.07■□□□□ 0.32
VIM-205ENST00000485947 SPTY2D1-AS1A0A0U1RR47 76 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 IGLON5A6NGN9 336 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 ERI2A8K979 691 aaKnown RBP17.06■□□□□ 0.32
VIM-205ENST00000485947 TP73O15350 636 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 TM7SF2O76062 418 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 SPINK2P20155 84 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 XPAP23025 273 aaPredicted RBP17.06■□□□□ 0.32
VIM-205ENST00000485947 PSMB4P28070 264 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 SERPINA4P29622 427 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 GKP32189 559 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 CD68P34810 354 aaPredicted RBP17.06■□□□□ 0.32
VIM-205ENST00000485947 MMP13P45452 471 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 AP1S1P61966 158 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 HNRNPKP61978 463 aaKnown RBP eCLIP17.06■□□□□ 0.32
VIM-205ENST00000485947 YPEL5P62699 121 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 POLR2LP62875 67 aaKnown RBP17.06■□□□□ 0.32
VIM-205ENST00000485947 PTK2BQ14289 1009 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 PRPSAP1Q14558 356 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 AGERQ15109 404 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 SMAD1Q15797 465 aaKnown RBP17.06■□□□□ 0.32
VIM-205ENST00000485947 UGP2Q16851 508 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 KCTD19Q17RG1 926 aaPredicted RBP17.06■□□□□ 0.32
VIM-205ENST00000485947 RALGPS1Q5JS13 557 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 CFAP58Q5T655 872 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 ERAP2Q6P179 960 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 Q6ZSR6 202 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 TMPRSS12Q86WS5 348 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 KLHDC8BQ8IXV7 354 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 GSPT2Q8IYD1 628 aaKnown RBP17.06■□□□□ 0.32
VIM-205ENST00000485947 CACTIN-AS1Q8N1I8 211 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 CNTD1Q8N815 330 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 OR13H1Q8NG92 308 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 CXorf40AQ8TE69 158 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 KLK6Q92876 244 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 CENPTQ96BT3 561 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 CNDP2Q96KP4 475 aaKnown RBP17.06■□□□□ 0.32
VIM-205ENST00000485947 BMFQ96LC9 184 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 AGAP3Q96P47 875 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 FCRL5Q96RD9 977 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 ATP13A3Q9H7F0 1226 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 GLOD4Q9HC38 313 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 SEPT3Q9UH03 358 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 TRPM6Q9BX84 2022 aa17.06■□□□□ 0.32
VIM-205ENST00000485947 TMEM131Q92545 1883 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 FLNBO75369 2602 aaKnown RBP17.05■□□□□ 0.32
VIM-205ENST00000485947 AKAP13Q12802 2813 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 E7EVH7 732 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 H3BM21 787 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 ANXA9O76027 345 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 HLA-DQB2P05538 268 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 TIMP2P16035 220 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 CKMT2P17540 419 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 NFKB1P19838 968 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 NFKBIAP25963 317 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 PFN3P60673 137 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 SARNPP82979 210 aaKnown RBP17.05■□□□□ 0.32
VIM-205ENST00000485947 BNIP3Q12983 259 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 FGL2Q14314 439 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 ZNF235Q14590 738 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 BEND6Q5SZJ8 279 aaPredicted RBP17.05■□□□□ 0.32
VIM-205ENST00000485947 SRLQ86TD4 932 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 EID2Q8N6I1 236 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 PNPLA1Q8N8W4 532 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 MCUQ8NE86 351 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 TBATAQ96M53 351 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 DUSP23Q9BVJ7 150 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 CINPQ9BW66 212 aaPredicted RBP17.05■□□□□ 0.32
VIM-205ENST00000485947 EVA1BQ9NVM1 165 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 CA5BQ9Y2D0 317 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 AAR2Q9Y312 384 aaKnown RBP17.05■□□□□ 0.32
VIM-205ENST00000485947 CSNK1G3Q9Y6M4 447 aa17.05■□□□□ 0.32
VIM-205ENST00000485947 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.04■□□□□ 0.32
VIM-205ENST00000485947 EIF3HO15372 352 aaKnown RBP eCLIP17.04■□□□□ 0.32
VIM-205ENST00000485947 SPINT1O43278 529 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 PPFIA2O75334 1257 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 PIAS2O75928 621 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 TMEM63AO94886 807 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 CSF2P04141 144 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 ALPPL2P10696 532 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 NME1P15531 152 aaKnown RBP17.04■□□□□ 0.32
VIM-205ENST00000485947 DGKAP23743 735 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 GEMP55040 296 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 SLC10A7Q0GE19 358 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 CBLBQ13191 982 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 SLMAPQ14BN4 828 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 FAXCQ5TGI0 409 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 ALG1LQ6GMV1 187 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 PTAR1Q7Z6K3 402 aaPredicted RBP17.04■□□□□ 0.32
VIM-205ENST00000485947 PARGQ86W56 976 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 OR4C6Q8NH72 309 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 BTN2A2Q8WVV5 523 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 ECHDC3Q96DC8 303 aa17.04■□□□□ 0.32
VIM-205ENST00000485947 POLR1EQ9GZS1 481 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms