RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CNTROBQ8N137 903 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 ETNPPLQ8TBG4 499 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 PRG4Q92954 1404 aaPredicted RBP5.95□□□□□ -1.46
USP40-213ENST00000483216 FAM149B1Q96BN6 582 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 IGSF21Q96ID5 467 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 C3orf30Q96M34 536 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 C7orf26Q96N11 449 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 CSF3RQ99062 836 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 MMP25Q9NPA2 562 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 ZNF224Q9NZL3 707 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 ABI3Q9P2A4 366 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 TINAGQ9UJW2 476 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 MKLN1Q9UL63 735 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 PROCRQ9UNN8 238 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 NUDCQ9Y266 331 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 DISP1Q96F81 1524 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 GOLGA6L9A6NEM1 432 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 B4E171 279 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 EIF3CLB5ME19 914 aaKnown RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 KDM4BO94953 1096 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 HSP90AA1P07900 732 aaKnown RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 LINC00271P0C7V0 271 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 BSGP35613 385 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 TSPAN7P41732 249 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 SEC61BP60468 96 aaKnown RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 OLR1P78380 273 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 EEF1A2Q05639 463 aaKnown RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 TMEM115Q12893 351 aaPredicted RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 ZNF155Q12901 538 aaPredicted RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 HAPLN4Q86UW8 402 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 RBMXL3Q8N7X1 1067 aaKnown RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 RND1Q92730 232 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 TANKQ92844 425 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 INTS12Q96CB8 462 aaKnown RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 TMEM47Q9BQJ4 181 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 SPRY4Q9C004 299 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 PPP1R3EQ9H7J1 279 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 KIF9Q9HAQ2 790 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 PCDH9Q9HC56 1237 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 IRAK4Q9NWZ3 460 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 SIX4Q9UIU6 781 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 TTC7AQ9ULT0 858 aaPredicted RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 RAPGEF6Q8TEU7 1601 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 RNF123Q5XPI4 1314 aa5.94□□□□□ -1.46
USP40-213ENST00000483216 CDK13Q14004 1512 aaKnown RBP5.94□□□□□ -1.46
USP40-213ENST00000483216 CEP170Q5SW79 1584 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 PTPRKQ15262 1439 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 MIA2Q96PC5 1412 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 FAM237AA0A1B0GTK4 181 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 EPB41L2O43491 1005 aaKnown RBP5.93□□□□□ -1.46
USP40-213ENST00000483216 PAGE4O60829 102 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 TIPRLO75663 272 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 CLEC3BP05452 202 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 SNRNP70P08621 437 aaKnown RBP5.93□□□□□ -1.46
USP40-213ENST00000483216 RRM1P23921 792 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 DDIT3P35638 169 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 RGS2P41220 211 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 BRWD1-AS2P59051 145 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 DCTN2Q13561 401 aaKnown RBP5.93□□□□□ -1.46
USP40-213ENST00000483216 TNFAIP1Q13829 316 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 CTF1Q16619 201 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 DPCR1Q3MIW9 517 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 WDR73Q6P4I2 378 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 KCTD18Q6PI47 426 aaPredicted RBP5.93□□□□□ -1.46
USP40-213ENST00000483216 TSSK4Q6SA08 328 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 KRBA2Q6ZNG9 492 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 PQLC2Q6ZP29 291 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 PAF1Q8N7H5 531 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 SMARCE1Q969G3 411 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 C1QTNF5Q9BXJ0 243 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 ZNF556Q9HAH1 456 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 SCPEP1Q9HB40 452 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 MCM9Q9NXL9 1143 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 C1RLQ9NZP8 487 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 DLGAP2Q9P1A6 1054 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 MALT1Q9UDY8 824 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 INSRP06213 1382 aa5.93□□□□□ -1.46
USP40-213ENST00000483216 AKNAQ7Z591 1439 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 UACAQ9BZF9 1416 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 GCC2Q8IWJ2 1684 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 SAA2-SAA4A0A096LPE2 208 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 AKR1B15C9JRZ8 316 aaPredicted RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 MID1O15344 667 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 AFPP02771 609 aaKnown RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 SPARCP09486 303 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 HSPA1AP0DMV8 641 aaKnown RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 HSPA1BP0DMV9 641 aaKnown RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 ZNF182P17025 639 aaPredicted RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 PSMA4P25789 261 aaKnown RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 HNRNPH2P55795 449 aaKnown RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 RPL36AP83881 106 aaKnown RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 TBCEQ15813 527 aaPredicted RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 CXorf66Q5JRM2 361 aaPredicted RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 SLC36A4Q6YBV0 504 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 CCNI2Q6ZMN8 369 aaPredicted RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 TMTC3Q6ZXV5 915 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 SPATA22Q8NHS9 363 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 MMABQ96EY8 250 aaPredicted RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 MPP4Q96JB8 637 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms