RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 C3AR1Q16581 482 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 MYLK3Q32MK0 819 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 RILPL1Q5EBL4 403 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 IZUMO3Q5VZ72 239 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 IGFL2Q6UWQ7 119 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 LEKR1Q6ZMV7 388 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 SV2BQ7L1I2 683 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 MRGPREQ86SM8 312 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 TMEM200AQ86VY9 491 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 PPP1R3BQ86XI6 285 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 PLPP6Q8IY26 295 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 GALNT16Q8N428 558 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 ZADH2Q8N4Q0 377 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 UBR7Q8N806 425 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 ATP6V0D2Q8N8Y2 350 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 RASSF8Q8NHQ8 419 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 PPP4R1Q8TF05 950 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 KLHL6Q8WZ60 621 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 NR4A3Q92570 626 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 ALPK1Q96QP1 1244 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 TMEM63CQ9P1W3 806 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 PCDHGC4Q9Y5F7 938 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 SLC30A1Q9Y6M5 507 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 ARID1AO14497 2285 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 TSPAN11A1L157 253 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 RASA4BC9J798 803 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 TEX33O43247 280 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 ZW10O43264 779 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 RASA4O43374 803 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 PAGE1O75459 146 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 SLCO2B1O94956 709 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 UNC5CO95185 931 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 PIGNO95427 931 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 MT-ND3P03897 115 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 MYCLP1P12525 358 aaPredicted RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 TFE3P19532 575 aaPredicted RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 RPL34P49207 117 aaKnown RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 HHEXQ03014 270 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 TFF3Q07654 80 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 CDC16Q13042 620 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 BIRC2Q13490 618 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 ZNF169Q14929 603 aaPredicted RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 ANKRD1Q15327 319 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 PLEKHS1Q5SXH7 462 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 FAAH2Q6GMR7 532 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 LCLAT1Q6UWP7 414 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 GFRALQ6UXV0 394 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 GDPD4Q6W3E5 623 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 RYBPQ8N488 228 aaPredicted RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 BCORP1Q8N888 145 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 CATSPER1Q8NEC5 780 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 OR2AP1Q8NGE2 309 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 FNIP1Q8TF40 1166 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 ARHGEF2Q92974 986 aaKnown RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 MR1Q95460 341 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 ISG20Q96AZ6 181 aaKnown RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 FAM149B1Q96BN6 582 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 HMCESQ96FZ2 354 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 COX4I2Q96KJ9 171 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 CLIC6Q96NY7 704 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 TGM7Q96PF1 710 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 PPP1R9BQ96SB3 815 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 SPON2Q9BUD6 331 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 WDR26Q9H7D7 661 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 PDE7BQ9NP56 450 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 SARS2Q9NP81 518 aaKnown RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 TFIP11Q9UBB9 837 aaKnown RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 TBC1D29Q9UFV1 150 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 G3BP2Q9UN86 482 aaKnown RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 SNX7Q9UNH6 387 aa4.75□□□□□ -1.65
USP4-209ENST00000475873 KMT2CQ8NEZ4 4911 aaKnown RBP4.75□□□□□ -1.65
USP4-209ENST00000475873 IGLV3-10A0A075B6K4 115 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SYNJ2BP-COX16A0A087WUM0 186 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 IGHV5-51A0A0C4DH38 117 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 DRGXA6NNA5 263 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 RNF225M0QZC1 329 aaPredicted RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 ADAM10O14672 748 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 IKBKBO14920 756 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 ZNHIT1O43257 154 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 THAP12O43422 761 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 EPB41L2O43491 1005 aaKnown RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 CUTAO60888 179 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 ALOX12BO75342 701 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 KLF7O75840 302 aaPredicted RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 POP4O95707 220 aaKnown RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 GSRP00390 522 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 ALPPP05187 535 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 RAB40ALP0C0E4 278 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 CD19P15391 556 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 NELFEP18615 380 aaKnown RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 TRIM21P19474 475 aaKnown RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 KELP23276 732 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 CASP1P29466 404 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 RORAP35398 523 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 PPM1FP49593 454 aaPredicted RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 EPHA4P54764 986 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 RRADP55042 308 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SOX8P57073 446 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SLC8A3P57103 927 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 TUBB3Q13509 450 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms