RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 OAS2P29728 719 aaKnown RBP12.55□□□□□ -0.4
SKA3-206ENST00000475251 GPR1P46091 355 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 ZNF135P52742 658 aaPredicted RBP12.55□□□□□ -0.4
SKA3-206ENST00000475251 POLR2FP61218 127 aaKnown RBP12.55□□□□□ -0.4
SKA3-206ENST00000475251 DPTQ07507 201 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 MAP7Q14244 749 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 ZNF235Q14590 738 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 CLEC16AQ2KHT3 1053 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 HSP90AA4PQ58FG1 418 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 DENND2CQ68D51 928 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 DCUN1D2Q6PH85 259 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 NDUFAF2Q8N183 169 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 PELI3Q8N2H9 469 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 BBS5Q8N3I7 341 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 ESX1Q8N693 406 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 PDCD6IPQ8WUM4 868 aaKnown RBP12.55□□□□□ -0.4
SKA3-206ENST00000475251 SH3KBP1Q96B97 665 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 MFRPQ9BY79 579 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 SPRY4Q9C004 299 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 TMEM9Q9P0T7 183 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 PHTF1Q9UMS5 762 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 AP4E1Q9UPM8 1137 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 PLAAQ9Y263 795 aa12.55□□□□□ -0.4
SKA3-206ENST00000475251 TMEM184BQ9Y519 407 aaPredicted RBP12.55□□□□□ -0.4
SKA3-206ENST00000475251 FLNCQ14315 2725 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 LOC101059948A0A1B0GTJ6 334 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 DFFAO00273 331 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 POLR1CO15160 346 aaPredicted RBP12.54□□□□□ -0.4
SKA3-206ENST00000475251 HTRA2O43464 458 aaPredicted RBP12.54□□□□□ -0.4
SKA3-206ENST00000475251 STK17BO94768 372 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 FUCA1P04066 466 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 SLC2A4P14672 509 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 ETV3P41162 512 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 JAM2P57087 298 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 LBRQ14739 615 aaKnown RBP12.54□□□□□ -0.4
SKA3-206ENST00000475251 TCP11X2Q5H9J9 407 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 RALGPS1Q5JS13 557 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 SNAP47Q5SQN1 464 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 C16orf46Q6P387 395 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 DOK6Q6PKX4 331 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 USP45Q70EL2 814 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 MON1BQ7L1V2 547 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 ARHGAP22Q7Z5H3 698 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 GALNT13Q8IUC8 556 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 SFRP1Q8N474 314 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 AVL9Q8NBF6 648 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 SCARF2Q96GP6 870 aaPredicted RBP12.54□□□□□ -0.4
SKA3-206ENST00000475251 CTRCQ99895 268 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.54□□□□□ -0.4
SKA3-206ENST00000475251 VPS16Q9H269 839 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 GANQ9H2C0 597 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 EPB41L1Q9H4G0 881 aa12.54□□□□□ -0.4
SKA3-206ENST00000475251 SEPT11Q9NVA2 429 aaKnown RBP12.54□□□□□ -0.4
SKA3-206ENST00000475251 A8MU76 341 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 VPS4BO75351 444 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 STAT5AP42229 794 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 POLD2P49005 469 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 EPHA4P54764 986 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 UBE2HP62256 183 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 RPL7AP62424 266 aaKnown RBP12.53□□□□□ -0.4
SKA3-206ENST00000475251 HHEXQ03014 270 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 PPP1R15BQ5SWA1 713 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 FKBP15Q5T1M5 1219 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 ERMARDQ5T6L9 678 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 TCTN3Q6NUS6 607 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 PPP1R2P3Q6NXS1 205 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 ADAMTSL4Q6UY14 1074 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 RFX8Q6ZV50 586 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 Q6ZVL8 140 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 HSD11B1LQ7Z5J1 315 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 CCDC13Q8IYE1 715 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 UNC5BQ8IZJ1 945 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 CBARPQ8N350 705 aaPredicted RBP12.53□□□□□ -0.4
SKA3-206ENST00000475251 SLC37A2Q8TED4 501 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 NSMCE1Q8WV22 266 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 SCRN2Q96FV2 425 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 NUDCD1Q96RS6 583 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 PCDHB18PQ96TA0 734 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 DHX35Q9H5Z1 703 aaKnown RBP12.53□□□□□ -0.4
SKA3-206ENST00000475251 SARS2Q9NP81 518 aaKnown RBP12.53□□□□□ -0.4
SKA3-206ENST00000475251 NLRC4Q9NPP4 1024 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 PRDM8Q9NQV8 689 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 FAM207AQ9NSI2 230 aaPredicted RBP12.53□□□□□ -0.4
SKA3-206ENST00000475251 VPS4AQ9UN37 437 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 TP53TG5Q9Y2B4 290 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 PCDHGC4Q9Y5F7 938 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 ST14Q9Y5Y6 855 aa12.53□□□□□ -0.4
SKA3-206ENST00000475251 LRRK2Q5S007 2527 aa12.52□□□□□ -0.4
SKA3-206ENST00000475251 RELNP78509 3460 aa12.52□□□□□ -0.4
SKA3-206ENST00000475251 TCRBV5S1A1TA0A578 114 aa12.52□□□□□ -0.41
SKA3-206ENST00000475251 INPP4BO15327 924 aa12.52□□□□□ -0.41
SKA3-206ENST00000475251 MTSS1O43312 755 aa12.52□□□□□ -0.41
SKA3-206ENST00000475251 DLGAP3O95886 979 aa12.52□□□□□ -0.41
SKA3-206ENST00000475251 ERCC2P18074 760 aa12.52□□□□□ -0.41
SKA3-206ENST00000475251 LHCGRP22888 699 aa12.52□□□□□ -0.41
SKA3-206ENST00000475251 PYCR3Q53H96 274 aa12.52□□□□□ -0.41
SKA3-206ENST00000475251 CT47A1Q5JQC4 288 aaPredicted RBP12.52□□□□□ -0.41
SKA3-206ENST00000475251 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.52□□□□□ -0.41
SKA3-206ENST00000475251 FHL5Q5TD97 284 aa12.52□□□□□ -0.41
SKA3-206ENST00000475251 TIPARPQ7Z3E1 657 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms