RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GFM1Q96RP9 751 aaKnown RBP15.68■□□□□ 0.1
CCDC88B-205ENST00000472524 MAK16Q9BXY0 300 aaKnown RBP15.68■□□□□ 0.1
CCDC88B-205ENST00000472524 FRMD8Q9BZ67 464 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-205ENST00000472524 ABCG8Q9H221 673 aa15.68■□□□□ 0.1
CCDC88B-205ENST00000472524 HYOU1Q9Y4L1 999 aa15.68■□□□□ 0.1
CCDC88B-205ENST00000472524 ZNF462Q96JM2 2506 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 CAPN8A6NHC0 703 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 NTN3O00634 580 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 APOL1O14791 398 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 NOBOXO60393 691 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 MTA2O94776 668 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 CEACAM5P06731 702 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 RBMS1P29558 406 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 CD86P42081 329 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 POLD2P49005 469 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 UCNP55089 124 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 AP1B1Q10567 949 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 ZBTB17Q13105 803 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 NPNTQ6UXI9 565 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 RFX6Q8HWS3 928 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 Q8N9G6 341 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 OR6C4Q8NGE1 309 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 PTCD2Q8WV60 388 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 GRAMD1AQ96CP6 724 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 AP2M1Q96CW1 435 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 ANP32EQ9BTT0 268 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 CEP41Q9BYV8 373 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 PCDH9Q9HC56 1237 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 SUFUQ9UMX1 484 aa15.67■□□□□ 0.1
CCDC88B-205ENST00000472524 A0A1W2PQM1 296 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 C3orf70A6NLC5 250 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 D6RAR5 112 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 PRLP01236 227 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 FUCA1P04066 466 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 ZNF30P17039 623 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 AK4P27144 223 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 TEAD1P28347 426 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 STC1P52823 247 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 DYNLT1P63172 113 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 SKOR1P84550 965 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 RHDQ02161 417 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 PTSQ03393 145 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 DPTQ07507 201 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 PPIDQ08752 370 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 ILF3Q12906 894 aaKnown RBP eCLIP15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 TBX2Q13207 712 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 C14orf28Q4W4Y0 310 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 CERCAMQ5T4B2 595 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 SLC9A4Q6AI14 798 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 OGFOD3Q6PK18 319 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 IGF2-ASQ6U949 168 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 B3GNT8Q7Z7M8 397 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 TRIM74Q86UV6 250 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 CCNJLQ8IV13 435 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 SCAMP4Q969E2 229 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 RNF25Q96BH1 459 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 GSDMCQ9BYG8 508 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 DPH1Q9BZG8 443 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 FOXP3Q9BZS1 431 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 TRIM5Q9C035 493 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 SEMA4CQ9C0C4 833 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 LRRN3Q9H3W5 708 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 EPB41L5Q9HCM4 733 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 SEPT10Q9P0V9 454 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 DNPEPQ9ULA0 475 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 RNF215Q9Y6U7 377 aa15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 ASH1LQ9NR48 2969 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-205ENST00000472524 CCDC187A0A096LP49 1063 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 ZNF487B1APH4 448 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 SPOPO43791 374 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 CLDN7O95471 211 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 SOD1P00441 154 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 MMP2P08253 660 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 GLB1P16278 677 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 MAZP56270 477 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 IFI35P80217 286 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 VAC14Q08AM6 782 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 HLTFQ14527 1009 aaKnown RBP eCLIP15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 SLC30A9Q6PML9 568 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 ADAMTSL4Q6UY14 1074 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 B4GALNT4Q76KP1 1039 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 MARK2Q7KZI7 788 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 NRROSQ86YC3 692 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 RHOT1Q8IXI2 618 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 WDR36Q8NI36 951 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 KIAA1524Q8TCG1 905 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 GPBAR1Q8TDU6 330 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 ZDHHC1Q8WTX9 485 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 AGAP2Q99490 1192 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 RIOK2Q9BVS4 552 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 SPATS2LQ9NUQ6 558 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 TAAR2Q9P1P5 351 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 LRIT1Q9P2V4 623 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 ATXN7L1Q9ULK2 861 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 SLC17A4Q9Y2C5 497 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 SSUH2Q9Y2M2 353 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 TMEM98Q9Y2Y6 226 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 PCDHGA8Q9Y5G5 932 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 AHCTF1Q8WYP5 2266 aa15.65■□□□□ 0.1
CCDC88B-205ENST00000472524 FLNBO75369 2602 aaKnown RBP15.64■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms