RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CLPXO76031 633 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 BPGMP07738 259 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 TCF7P36402 384 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 BCL2L1Q07817 233 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 MKRN4PQ13434 485 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 ATP13A3Q9H7F0 1226 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 CALML5Q9NZT1 146 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 DAGLAQ9Y4D2 1042 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF780BQ9Y6R6 833 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 KANTRA0A1W2PQU2 76 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 CD2P06729 351 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 GRIA1P42261 906 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 LIPEQ05469 1076 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 COLGALT2Q8IYK4 626 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 C1GALT1C1Q96EU7 318 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 PCDHB1Q9Y5F3 818 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 TCRBV9S1A1TA0A576 114 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 ELOVL7A1L3X0 281 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 PARNO95453 639 aaKnown RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 RB1P06400 928 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 GALK1P51570 392 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 GJB7Q6PEY0 223 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 TIFAQ96CG3 184 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 NXNL1Q96CM4 212 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 GJB6O95452 261 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 CKMP06732 381 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 C7P10643 843 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 SMARCB1Q12824 385 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 CPTPQ5TA50 214 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 LRRC69Q6ZNQ3 347 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF572Q7Z3I7 529 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 BRSK2Q8IWQ3 736 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 SLC44A1Q8WWI5 657 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 UFD1Q92890 307 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 WNT8BQ93098 351 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 SENP2Q9HC62 589 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 GSTT2P0CG29 244 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 TUBP50607 506 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 SNRPD1P62314 119 aaKnown RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 ATXN7L2Q5T6C5 722 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 TAPT1Q6NXT6 567 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 DNAJC14Q6Y2X3 702 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 RDH12Q96NR8 316 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 MRPS33Q9Y291 106 aaKnown RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 A0A1B0GVC2 190 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 FAM25EA8MYX2 175 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 ATP6V1G1O75348 118 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 FGBP02675 491 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 ACSL1P33121 698 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 UBAP2LQ14157 1087 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 FNBP1LQ5T0N5 605 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 RAB11FIP2Q7L804 512 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 SLC4A11Q8NBS3 891 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 FAM84AQ96KN4 292 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 OR2B2Q9GZK3 357 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 XPR1Q9UBH6 696 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 TBC1D24Q9ULP9 559 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 FAM205CA6NFA0 338 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 EPCAMP16422 314 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 SLC7A1P30825 629 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 TUFMP49411 452 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 HMGCS2P54868 508 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 CCDC28AQ8IWP9 274 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF567Q8N184 647 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 PHB2Q99623 299 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 ALG9Q9H6U8 611 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 TMEM134Q9H6X4 195 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 ABT1Q9ULW3 272 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 PCDHGB2Q9Y5G2 931 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 EFCAB9A8MZ26 197 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 KCNK1O00180 336 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF234Q14588 700 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 PAPSS2O95340 614 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 RTP1P59025 263 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 CNPY1Q3B7I2 92 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 TRMT11Q7Z4G4 463 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 COMMD4Q9H0A8 199 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 C3orf14Q9HBI5 128 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 AGO4Q9HCK5 861 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 PCDHGC3Q9UN70 934 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 TFR2Q9UP52 801 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 KIAA0100Q14667 2235 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 FAM172BPA6NC97 362 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 NPPAP01160 153 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 CCNB1P14635 433 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 IRF8Q02556 426 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 GTPBP2Q9BX10 602 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 MRPL9Q9BYD2 267 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 DNAJC11Q9NVH1 559 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 A0A0J9YYE9 177 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 PPEF2O14830 753 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 PSIP1O75475 530 aaKnown RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 HSD17B12Q53GQ0 312 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 CYP2U1Q7Z449 544 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 PGBD3Q8N328 593 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 FSTL5Q8N475 847 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 EPS8L1Q8TE68 723 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 SLC35C1Q96A29 364 aa13.28□□□□□ -0.28
COL6A3-209ENST00000472056 TOR4AQ9NXH8 423 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms