RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FGF1P05230 155 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 TPM3P06753 285 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 KRT7P08729 469 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 SLC5A2P31639 672 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 GPR1P46091 355 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 EPHB1P54762 984 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 MAZP56270 477 aaKnown RBP16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 B4GALNT1Q00973 533 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 DSC2Q02487 901 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 PTSQ03393 145 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 CLN3Q13286 438 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 PEX6Q13608 980 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 IHHQ14623 411 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 SLC18A3Q16572 532 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 ADAMTSL4Q6UY14 1074 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 RFLNAQ6ZTI6 216 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 ZNF765Q7L2R6 523 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 ZNF438Q7Z4V0 828 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 NLRP8Q86W28 1048 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 PTCD2Q8WV60 388 aaKnown RBP16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 CTNNBL1Q8WYA6 563 aaPredicted RBP16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 TMEM159Q96B96 161 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 AP2M1Q96CW1 435 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 WBP1Q96G27 269 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 SCARF2Q96GP6 870 aaPredicted RBP16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 SMIM14Q96QK8 99 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 TDRD1Q9BXT4 1180 aaKnown RBP16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 XPO4Q9C0E2 1151 aaKnown RBP16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 CD84Q9UIB8 345 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 DNPEPQ9ULA0 475 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 LOXL2Q9Y4K0 774 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 A0A0U1RQS6 177 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 SOD1P00441 154 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 PYGLP06737 847 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 JMJD7P0C870 316 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 HGFP14210 728 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 MX2P20592 715 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 CA4P22748 312 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 AK4P27144 223 aaPredicted RBP16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 MAN1A1P33908 653 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 ADCY8P40145 1251 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 POLD2P49005 469 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 CTBSQ01459 385 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 NR1D2Q14995 579 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 TAF1BQ53T94 588 aaPredicted RBP16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 JAMLQ86YT9 394 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 SLITRK4Q8IW52 837 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 RAVER1Q8IY67 606 aaKnown RBP16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 ZNF843Q8N446 348 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 PQLC3Q8N755 202 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 ARRDC2Q8TBH0 407 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 PACSIN1Q9BY11 444 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 PISDQ9UG56 409 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 ACSL6Q9UKU0 697 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 CHKBQ9Y259 395 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 TTLL3Q9Y4R7 772 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 ST14Q9Y5Y6 855 aa16.51■□□□□ 0.23
CCDC28B-204ENST00000469003 MYO18BQ8IUG5 2567 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 CAPN8A6NHC0 703 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 RHPN2P1A8MT19 583 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 K7ENP7 123 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 ZW10O43264 779 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 B4GAT1O43505 415 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 ECEL1O95672 775 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 PRLP01236 227 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 HLA-DQB2P05538 268 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 PTMSP20962 102 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 STC1P52823 247 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 RPL26P61254 145 aaKnown RBP16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 GBE1Q04446 702 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 ASTE1Q2TB18 679 aaPredicted RBP16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 ZSCAN23Q3MJ62 389 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 MAP9Q49MG5 647 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 INO80CQ6PI98 192 aaPredicted RBP16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 DOK6Q6PKX4 331 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 SLC30A9Q6PML9 568 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 TMPRSS9Q7Z410 1059 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 NRSN1Q8IZ57 195 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 OR8K1Q8NGG5 319 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 SCAMP4Q969E2 229 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 HDAC11Q96DB2 347 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 DNAJC7Q99615 494 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 CDH19Q9H159 772 aa16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 RPL26L1Q9UNX3 145 aaKnown RBP16.5■□□□□ 0.23
CCDC28B-204ENST00000469003 HECTD1Q9ULT8 2610 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 SPTA1P02549 2419 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 SSU72P8A0A1W2PR75 194 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 NVLO15381 856 aaKnown RBP16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 CPNE6O95741 557 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 TMEM253P0C7T8 217 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 KDELR1P24390 212 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 OR1D5P58170 312 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 NIPAL4Q0D2K0 466 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 SLC10A2Q12908 348 aaPredicted RBP16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 TRIM14Q14142 442 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 CLPPQ16740 277 aaPredicted RBP16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 ZFYVE27Q5T4F4 411 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 CCDC81Q6ZN84 652 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms