RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 MMP12P39900 470 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 TNNT3P45378 269 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-205ENST00000465238 THOP1P52888 689 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 RPL26P61254 145 aaKnown RBP17.72■□□□□ 0.43
COL7A1-205ENST00000465238 SNX1Q13596 522 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 PTK2BQ14289 1009 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 PRPSAP1Q14558 356 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 PCSK7Q16549 785 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 CCDC70Q6NSX1 233 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 USP45Q70EL2 814 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 DPPA4Q7L190 304 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 KDELC2Q7Z4H8 507 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 RASGEF1CQ8N431 466 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 LPCAT1Q8NF37 534 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 BTN2A2Q8WVV5 523 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 PIH1D2Q8WWB5 315 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 CENPTQ96BT3 561 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 SCRN2Q96FV2 425 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 SPATA13Q96N96 652 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 WDR24Q96S15 920 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 NAPGQ99747 312 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-205ENST00000465238 C1QTNF7Q9BXJ2 289 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 ABCG4Q9H172 646 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 UBP1Q9NZI7 540 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 FAM153AQ9UHL3 310 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 RPL26L1Q9UNX3 145 aaKnown RBP17.72■□□□□ 0.43
COL7A1-205ENST00000465238 U3KQA8 63 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 LRRK1Q38SD2 2015 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 CTAGE9A4FU28 777 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 A8MX80 341 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 F5H423 210 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-205ENST00000465238 CES2O00748 559 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 TOR1BO14657 336 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 TPP1O14773 563 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 LZTS3O60299 673 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-205ENST00000465238 ANXA9O76027 345 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 MT-CYBP00156 380 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-205ENST00000465238 CTPS1P17812 591 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 TCP1P17987 556 aaKnown RBP17.71■□□□□ 0.43
COL7A1-205ENST00000465238 VIPR1P32241 457 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 LIG3P49916 1009 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 YPEL5P62699 121 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 CDK18Q07002 472 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 SIX1Q15475 284 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-205ENST00000465238 TBC1D25Q3MII6 688 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 TPRG1LQ5T0D9 272 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 ARHGEF18Q6ZSZ5 1173 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 CCDC110Q8TBZ0 833 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 TADA1Q96BN2 335 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 MS4A14Q96JA4 679 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 BBC3Q96PG8 261 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-205ENST00000465238 GBA3Q9H227 469 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 B4GALT6Q9UBX8 382 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 KLF15Q9UIH9 416 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 TTC7AQ9ULT0 858 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-205ENST00000465238 PPIL1Q9Y3C6 166 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 PCDHB1Q9Y5F3 818 aa17.71■□□□□ 0.43
COL7A1-205ENST00000465238 A0A0J9YYE9 177 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 EIF4E1BA6NMX2 242 aaKnown RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 PGRMC1O00264 195 aaKnown RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 GCATO75600 419 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 PRLP01236 227 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 TRBC1P01850 177 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 ALPIP09923 528 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 ELFN1P0C7U0 828 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 MYF5P13349 255 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 GEMP55040 296 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 EIF2B5Q13144 721 aaKnown RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 MPP3Q13368 585 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 ARHGEF7Q14155 803 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 OASLQ15646 514 aaKnown RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 LSMEM2Q8N112 164 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 IFI44Q8TCB0 444 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 MAPK15Q8TD08 544 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 LMX1AQ8TE12 382 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 COG1Q8WTW3 980 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 TBATAQ96M53 351 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 PPP1R2P1Q96PQ5 205 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 MCCC1Q96RQ3 725 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 UBL7Q96S82 380 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 MLPHQ9BV36 600 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 PRORYQ9H606 182 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 SPASTQ9UBP0 616 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 DRG1Q9Y295 367 aaKnown RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 AAR2Q9Y312 384 aaKnown RBP17.7■□□□□ 0.42
COL7A1-205ENST00000465238 KALRNO60229 2985 aa17.7■□□□□ 0.42
COL7A1-205ENST00000465238 GCN1Q92616 2671 aaKnown RBP17.69■□□□□ 0.42
COL7A1-205ENST00000465238 ANKRD66B4E2M5 251 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 CSO75390 466 aaKnown RBP17.69■□□□□ 0.42
COL7A1-205ENST00000465238 C6P13671 934 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 PSMB4P28070 264 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 IGFALSP35858 605 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 GDF10P55107 478 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 WNT3AP56704 352 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 RALGDSQ12967 914 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 GALNT3Q14435 633 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 QPCTQ16769 361 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 PAPD7Q5XG87 772 aaKnown RBP17.69■□□□□ 0.42
COL7A1-205ENST00000465238 DRICH1Q6PGQ1 229 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-205ENST00000465238 LIPIQ6XZB0 460 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms