RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CCDC74BQ96LY2 380 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 NT5MQ9NPB1 228 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 PPIL1Q9Y3C6 166 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 ARHGEF17Q96PE2 2063 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-204ENST00000462475 PPM1DO15297 605 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 MFSD11O43934 449 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 FZD6O60353 706 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 CSF2RBP32927 897 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 ACTR1BP42025 376 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 GPR1P46091 355 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 ARSDP51689 593 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 ACTR1AP61163 376 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 DPTQ07507 201 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 MMRN1Q13201 1228 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 BIRC2Q13490 618 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 PIGHQ14442 188 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-204ENST00000462475 TDRD12Q587J7 1177 aaKnown RBP16.04■□□□□ 0.16
COL7A1-204ENST00000462475 LRRC66Q68CR7 880 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 PRICKLE2Q7Z3G6 844 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 NIPA2Q8N8Q9 360 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 TEKT4Q8WW24 435 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 HTR3CQ8WXA8 447 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 JPH3Q8WXH2 748 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-204ENST00000462475 OR2M4Q96R27 311 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 SEMA3CQ99985 751 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 THAP2Q9H0W7 228 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 ABCG8Q9H221 673 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 AKAP7Q9P0M2 348 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-204ENST00000462475 TMEM98Q9Y2Y6 226 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 PCDHB11Q9Y5F2 797 aa16.04■□□□□ 0.16
COL7A1-204ENST00000462475 SMTNL1A8MU46 457 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-204ENST00000462475 HGSO14964 777 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-204ENST00000462475 ITGB2P05107 769 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 CD48P09326 243 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 FAM87AP0C7U9 286 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 IL4RP24394 825 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 CD82P27701 267 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 CYP4F2P78329 520 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 IHHQ14623 411 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 CLPPQ16740 277 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-204ENST00000462475 HGSNATQ68CP4 663 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 ADAMTSL4Q6UY14 1074 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 MARK2Q7KZI7 788 aaKnown RBP16.03■□□□□ 0.16
COL7A1-204ENST00000462475 TEX26Q8N6G2 289 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 SCAMP4Q969E2 229 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 AP2M1Q96CW1 435 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 SCARF2Q96GP6 870 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-204ENST00000462475 AGAP2Q99490 1192 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 ARHGAP9Q9BRR9 750 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 CDH19Q9H159 772 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 TMEM9Q9P0T7 183 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 ANAPC7Q9UJX3 599 aa16.03■□□□□ 0.16
COL7A1-204ENST00000462475 TLN1Q9Y490 2541 aaKnown RBP16.02■□□□□ 0.16
COL7A1-204ENST00000462475 SPTA1P02549 2419 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 IGHV1OR21-1A0A087WYE8 117 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 A0A0J9YYE9 177 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 MAP3K6O95382 1288 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 TRBC1P01850 177 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 FGF3P11487 239 aaPredicted RBP16.02■□□□□ 0.16
COL7A1-204ENST00000462475 MPSTP25325 297 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 GPR3P46089 330 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 LIMK2P53671 638 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 NFKB2Q00653 900 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 ITKQ08881 620 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 KRT81Q14533 505 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 TBR1Q16650 682 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 TMEM164Q5U3C3 297 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.02■□□□□ 0.16
COL7A1-204ENST00000462475 NUP85Q9BW27 656 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 B3GNT4Q9C0J1 378 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 POLR1EQ9GZS1 481 aaKnown RBP16.02■□□□□ 0.16
COL7A1-204ENST00000462475 CLMPQ9H6B4 373 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 IP6K2Q9UHH9 426 aa16.02■□□□□ 0.16
COL7A1-204ENST00000462475 STMND1H3BQB6 276 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 ZW10O43264 779 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 THRAP10827 490 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 ITGB6P18564 788 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 ZNF165P49910 485 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 STC1P52823 247 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 DSC2Q02487 901 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 PTSQ03393 145 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 GALNT2Q10471 571 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 NR1I3Q14994 352 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 PYCR3Q53H96 274 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 FIGNQ5HY92 759 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 NCBP2-AS2Q69YL0 99 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 ZNF761Q86XN6 746 aaPredicted RBP16.01■□□□□ 0.15
COL7A1-204ENST00000462475 CPNE8Q86YQ8 564 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 ZSCAN1Q8NBB4 408 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 OR4D9Q8NGE8 314 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 FAM71BQ8TC56 605 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 SLC37A2Q8TED4 501 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 TAAR9Q96RI9 348 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 TRIM4Q9C037 500 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 FAM117AQ9C073 453 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 STARD5Q9NSY2 213 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 KCNK4Q9NYG8 393 aa16.01■□□□□ 0.15
COL7A1-204ENST00000462475 RCOR3Q9P2K3 495 aaPredicted RBP16.01■□□□□ 0.15
COL7A1-204ENST00000462475 PCDHGA3Q9Y5H0 932 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms