RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 ABCG8Q9H221 673 aa28.2■■■□□ 2.1
CBX4-202ENST00000448310 PPIL1Q9Y3C6 166 aa28.2■■■□□ 2.1
CBX4-202ENST00000448310 SETXQ7Z333 2677 aaKnown RBP28.19■■■□□ 2.1
CBX4-202ENST00000448310 CAPN8A6NHC0 703 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 FZD6O60353 706 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 CPNE6O95741 557 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 SOD1P00441 154 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 SERPING1P05155 500 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 LIPCP11150 499 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 TEAD1P28347 426 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 ADCY8P40145 1251 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 IHHQ14623 411 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 ZNF438Q7Z4V0 828 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 TRIM74Q86UV6 250 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 LUZP1Q86V48 1076 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 PIM3Q86V86 326 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 LRRN4Q8WUT4 740 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 SYN2Q92777 582 aaPredicted RBP28.19■■■□□ 2.1
CBX4-202ENST00000448310 SCAMP4Q969E2 229 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 TMEM159Q96B96 161 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 CBX8Q9HC52 389 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 RCOR3Q9P2K3 495 aaPredicted RBP28.19■■■□□ 2.1
CBX4-202ENST00000448310 TMEM98Q9Y2Y6 226 aa28.19■■■□□ 2.1
CBX4-202ENST00000448310 MYO1FO00160 1098 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 IVLP07476 585 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 GARSP41250 739 aaKnown RBP28.18■■■□□ 2.1
CBX4-202ENST00000448310 ARSEP51690 589 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 DSC2Q02487 901 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 DPTQ07507 201 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 DPYSL3Q14195 570 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 NCBP2-AS2Q69YL0 99 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 NAGSQ8N159 534 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 RCBTB1Q8NDN9 531 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 FAM71BQ8TC56 605 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 AP2M1Q96CW1 435 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 POLR1EQ9GZS1 481 aaKnown RBP28.18■■■□□ 2.1
CBX4-202ENST00000448310 TTLL3Q9Y4R7 772 aa28.18■■■□□ 2.1
CBX4-202ENST00000448310 TENM4Q6N022 2769 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 C9orf172C9J069 976 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 ACTR1BP42025 376 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 ACTR1AP61163 376 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 GALNT2Q10471 571 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 BIRC2Q13490 618 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 CCDC122Q5T0U0 273 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 ALKBH5Q6P6C2 394 aaKnown RBP28.17■■■□□ 2.1
CBX4-202ENST00000448310 ZNF574Q6ZN55 896 aaPredicted RBP28.17■■■□□ 2.1
CBX4-202ENST00000448310 MARK2Q7KZI7 788 aaKnown RBP28.17■■■□□ 2.1
CBX4-202ENST00000448310 VASH2Q86V25 355 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 MED8Q96G25 268 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 AGAP2Q99490 1192 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 SDK2Q58EX2 2172 aa28.17■■■□□ 2.1
CBX4-202ENST00000448310 A0A0J9YYE9 177 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 TRBC1P01850 177 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 CCL4P13236 92 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 EPHB1P54762 984 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 UBASH3AP57075 661 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 ZBED6P86452 979 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 PTSQ03393 145 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 NR1D2Q14995 579 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 HADHQ16836 314 aaKnown RBP28.16■■■□□ 2.1
CBX4-202ENST00000448310 ADAMTSL4Q6UY14 1074 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 LRRC49Q8IUZ0 686 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 NDUFAF2Q8N183 169 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 ZNF564Q8TBZ8 553 aaPredicted RBP28.16■■■□□ 2.1
CBX4-202ENST00000448310 OR2M4Q96R27 311 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 CHKBQ9Y259 395 aa28.16■■■□□ 2.1
CBX4-202ENST00000448310 FLNBO75369 2602 aaKnown RBP28.16■■■□□ 2.1
CBX4-202ENST00000448310 SYCE3A1L190 88 aa28.15■■■□□ 2.1
CBX4-202ENST00000448310 PPM1DO15297 605 aa28.15■■■□□ 2.1
CBX4-202ENST00000448310 CD1CP29017 333 aa28.15■■■□□ 2.1
CBX4-202ENST00000448310 PAFAH1B3Q15102 231 aaKnown RBP28.15■■■□□ 2.1
CBX4-202ENST00000448310 NKAIN2Q5VXU1 208 aa28.15■■■□□ 2.1
CBX4-202ENST00000448310 MAML1Q92585 1016 aa28.15■■■□□ 2.1
CBX4-202ENST00000448310 SCARF2Q96GP6 870 aaPredicted RBP28.15■■■□□ 2.1
CBX4-202ENST00000448310 CDH19Q9H159 772 aa28.15■■■□□ 2.1
CBX4-202ENST00000448310 RBM22Q9NW64 420 aaKnown RBP eCLIP28.15■■■□□ 2.17e-7■■■■□ 21
CBX4-202ENST00000448310 CAPN11Q9UMQ6 739 aa28.15■■■□□ 2.1
CBX4-202ENST00000448310 IGHV5-10-1A0A0J9YXX1 117 aa28.14■■■□□ 2.1
CBX4-202ENST00000448310 MATN3O15232 486 aa28.14■■■□□ 2.1
CBX4-202ENST00000448310 INPP4BO15327 924 aa28.14■■■□□ 2.1
CBX4-202ENST00000448310 TPM4P67936 248 aa28.14■■■□□ 2.1
CBX4-202ENST00000448310 ANKRD20A8PQ5CZ79 823 aa28.14■■■□□ 2.1
CBX4-202ENST00000448310 MANEAQ5SRI9 462 aa28.14■■■□□ 2.1
CBX4-202ENST00000448310 SGF29Q96ES7 293 aa28.14■■■□□ 2.1
CBX4-202ENST00000448310 CCDC74BQ96LY2 380 aa28.14■■■□□ 2.1
CBX4-202ENST00000448310 TDRD1Q9BXT4 1180 aaKnown RBP28.14■■■□□ 2.1
CBX4-202ENST00000448310 B8ZZF3 427 aa28.13■■■□□ 2.09
CBX4-202ENST00000448310 J3QKU1 62 aa28.13■■■□□ 2.09
CBX4-202ENST00000448310 STC1P52823 247 aa28.13■■■□□ 2.09
CBX4-202ENST00000448310 TAS2R40P59535 323 aa28.13■■■□□ 2.09
CBX4-202ENST00000448310 ALG1LQ6GMV1 187 aa28.13■■■□□ 2.09
CBX4-202ENST00000448310 TIGD7Q6NT04 549 aaPredicted RBP28.13■■■□□ 2.09
CBX4-202ENST00000448310 KCTD6Q8NC69 237 aa28.13■■■□□ 2.09
CBX4-202ENST00000448310 RIOK2Q9BVS4 552 aaKnown RBP28.13■■■□□ 2.09
CBX4-202ENST00000448310 AKAP7Q9P0M2 348 aaPredicted RBP28.13■■■□□ 2.09
CBX4-202ENST00000448310 SEPT10Q9P0V9 454 aa28.13■■■□□ 2.09
CBX4-202ENST00000448310 TRBV23OR9-2A0A075B6M9 112 aa28.12■■■□□ 2.09
CBX4-202ENST00000448310 CLDN7O95471 211 aa28.12■■■□□ 2.09
CBX4-202ENST00000448310 PRLP01236 227 aa28.12■■■□□ 2.09
CBX4-202ENST00000448310 GYPCP04921 128 aa28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms