RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CPSF6Q16630 551 aaKnown RBP eCLIP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 KIAA0930Q6ICG6 404 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 LRRTM3Q86VH5 581 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 TMPRSS6Q8IU80 811 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 C12orf76Q8N812 135 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF555Q8NEP9 628 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 AZIN2Q96A70 460 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 VPS50Q96JG6 964 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 C1orf74Q96LT6 269 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SLC12A4Q9UP95 1085 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 BTRCQ9Y297 605 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF711Q9Y462 761 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF840PA6NDX5 716 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 HDAC3O15379 428 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 LYPLA1O75608 230 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 CBX6O95503 412 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 PRKCGP05129 697 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 TIE1P35590 1138 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 DEFB103AP81534 67 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 RING1Q06587 406 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 UBXN2BQ14CS0 331 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ALFQ53S48 1182 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 CYP20A1Q6UW02 462 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 GDPD4Q6W3E5 623 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 Q6ZVU0 165 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 MPP5Q8N3R9 675 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 HDDC3Q8N4P3 179 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF614Q8N883 585 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF366Q8N895 744 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 GLIS1Q8NBF1 620 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 OR2AP1Q8NGE2 309 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 DIS3LQ8TF46 1054 aaKnown RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 TCF12Q99081 682 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 EBF3Q9H4W6 596 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ZDHHC18Q9NUE0 388 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 DZANK1Q9NVP4 752 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 WARS2Q9UGM6 360 aaKnown RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ECM29Q5VYK3 1845 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 LRRC72A6NJI9 287 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 FOXO6A8MYZ6 492 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 FAM72CH0Y354 149 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SLC31A1O15431 190 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ATP6V1E1P36543 226 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 AFF1P51825 1210 aaKnown RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SH3BGRP55822 239 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 WDR5P61964 334 aaKnown RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 FAM72AQ5TYM5 149 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 FAM72DQ6L9T8 149 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 FAM72BQ86X60 149 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 OR13C4Q8NGS5 318 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 QRFPRQ96P65 431 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 BBS4Q96RK4 519 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 KCTD14Q9BQ13 255 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SLC25A23Q9BV35 468 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ACAT2Q9BWD1 397 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 RREB1Q92766 1687 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 AZIN1O14977 448 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 KDELR3O43731 214 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SNUPNO95149 360 aaKnown RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 HNRNPA1P09651 372 aaKnown RBP eCLIP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 MAT2AP31153 395 aaKnown RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ZBTB17Q13105 803 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 RAB33AQ14088 237 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 DMC1Q14565 340 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SLC1A5Q15758 541 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 C3orf58Q8NDZ4 430 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 MARK4Q96L34 752 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 TMEM109Q9BVC6 243 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 NOD2Q9HC29 1040 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 POLMQ9NP87 494 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 IL36AQ9UHA7 158 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 CORO1CQ9ULV4 474 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 A0A088AWK7 358 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 C2orf78A6NCI8 922 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 GABRDO14764 452 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 NBNO60934 754 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 RFPL2O75678 378 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CNPP09543 421 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CTSAP10619 480 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 TNNI3P19429 210 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF10P21506 573 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 HPCAL1P37235 193 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 C21orf59P57076 290 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SKP1P63208 163 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 MOGSQ13724 837 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 RCN1Q15293 331 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SIRPB2Q5JXA9 342 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CEP68Q76N32 757 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 TTC9BQ8N6N2 239 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 PCDH20Q8N6Y1 951 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 DCAF4L2Q8NA75 395 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CYGBQ8WWM9 190 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 STARD8Q92502 1023 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CASD1Q96PB1 797 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 TMEM237Q96Q45 408 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SOHLH2Q9NX45 425 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 A0A0D9SEW6 157 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 KANSL1LA0AUZ9 987 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms