RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 WIPF2Q8TF74 440 aaPredicted RBP4.28□□□□□ -1.72
VPS29-202ENST00000447578 GTF3C6Q969F1 213 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 MEIS3Q99687 375 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 NCAPGQ9BPX3 1015 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 H2AFJQ9BTM1 129 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 TRMOQ9BU70 441 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 SCNM1Q9BWG6 230 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 APOL6Q9BWW8 343 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 STRA6Q9BX79 667 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 TEX12Q9BXU0 123 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 DCTPP1Q9H773 170 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 SLC35C2Q9NQQ7 365 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 GAR1Q9NY12 217 aaKnown RBP4.28□□□□□ -1.72
VPS29-202ENST00000447578 NCKIPSDQ9NZQ3 722 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 CHMP5Q9NZZ3 219 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 NLKQ9UBE8 527 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 HAO1Q9UJM8 370 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 A4GNTQ9UNA3 340 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 PCDHGB5Q9Y5G0 923 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 SESN1Q9Y6P5 492 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 FAM169AQ9Y6X4 670 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 RGS12O14924 1447 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 MAP2P11137 1827 aaKnown RBP4.28□□□□□ -1.72
VPS29-202ENST00000447578 KDRP35968 1356 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 CEP170BQ9Y4F5 1589 aaPredicted RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 RGPD1P0DJD0 1748 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 TARSL2A2RTX5 802 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 HTATSF1O43719 755 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 PAGE4O60829 102 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 HMMRO75330 724 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 TBCAO75347 108 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 ADAP00813 363 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 SERPINC1P01008 464 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 IRF1P10914 325 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 BLKP51451 505 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 CEBPZQ03701 1054 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 CSTF3Q12996 717 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 NTRK2Q16620 822 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 PFKFB3Q16875 520 aaPredicted RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 ZSCAN23Q3MJ62 389 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 C1orf141Q5JVX7 400 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 C10orf76Q5T2E6 689 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 HECTD3Q5T447 861 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 SERTAD4-AS1Q5TG53 156 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 DAB2IPQ5VWQ8 1189 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 TMEM268Q5VZI3 342 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 CPLX2Q6PUV4 134 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 FAM47EQ6ZV65 393 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 KLBQ86Z14 1044 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 GALNT13Q8IUC8 556 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 MMP21Q8N119 569 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 EXD3Q8N9H8 876 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 PSPC1Q8WXF1 523 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 SNX21Q969T3 373 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 THOC3Q96J01 351 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 HIC2Q96JB3 615 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 ZNF347Q96SE7 839 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 NUAK2Q9H093 628 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 NDST4Q9H3R1 872 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 RABEP2Q9H5N1 569 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 Q9N2J8 555 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 TXNRD2Q9NNW7 524 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 SPATS2LQ9NUQ6 558 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 GIMAP4Q9NUV9 329 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 ARL8BQ9NVJ2 186 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 DLGAP2Q9P1A6 1054 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 FBXO4Q9UKT5 387 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 TNFSF13BQ9Y275 285 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 VIRMAQ69YN4 1812 aaKnown RBP4.27□□□□□ -1.73
VPS29-202ENST00000447578 ATP10DQ9P241 1426 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 RTL1A6NKG5 1358 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 MAP3K5Q99683 1374 aa4.27□□□□□ -1.73
VPS29-202ENST00000447578 NALCNQ8IZF0 1738 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 SPATA31A5Q5VU36 1347 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 SPATA31A7Q8IWB4 1347 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 A0A1W2PQF6 199 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 SERINC4A6NH21 518 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 UBE2CO00762 179 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 CTDSP2O14595 271 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 ADAM20O43506 726 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 USP12O75317 370 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 IPO7O95373 1038 aaKnown RBP4.26□□□□□ -1.73
VPS29-202ENST00000447578 RB1P06400 928 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 FGF2P09038 288 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 SELLP14151 372 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 SLC2A4P14672 509 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 EEF1DP29692 281 aaKnown RBP4.26□□□□□ -1.73
VPS29-202ENST00000447578 HSD17B4P51659 736 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 YWHAZP63104 245 aaKnown RBP4.26□□□□□ -1.73
VPS29-202ENST00000447578 ZBTB16Q05516 673 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 TNFAIP1Q13829 316 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 PPP2R5BQ15173 497 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 TAF7Q15545 349 aaPredicted RBP4.26□□□□□ -1.73
VPS29-202ENST00000447578 HIST2H2ACQ16777 129 aaPredicted RBP4.26□□□□□ -1.73
VPS29-202ENST00000447578 CASC1Q6TDU7 716 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 RTL10Q7L3V2 364 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 GALNTL5Q7Z4T8 443 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 RHPN2Q8IUC4 686 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 POMGNT2Q8NAT1 580 aa4.26□□□□□ -1.73
VPS29-202ENST00000447578 GDPD5Q8WTR4 605 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms