RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 BCL10O95999 233 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 CDH2P19022 906 aaPredicted RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 CDKN2DP55273 166 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 TMEM26Q6ZUK4 368 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 GLT6D1Q7Z4J2 308 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 ITFG1Q8TB96 612 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 CDK15Q96Q40 435 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 TRMOQ9BU70 441 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 OSBPL2Q9H1P3 480 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 DNAAF2Q9NVR5 837 aaKnown RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 CDC14AQ9UNH5 594 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 PKP3Q9Y446 797 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 KANSL1LA0AUZ9 987 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 CCDC162PA2VCL2 907 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 CLCQ05315 142 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 GRM2Q14416 872 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 KCTD11Q693B1 232 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 KIAA0408Q6ZU52 694 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 MFSD6LQ8IWD5 586 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 LGI2Q8N0V4 545 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 TMCO5AQ8N6Q1 288 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 RTL3Q8N8U3 475 aaKnown RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 ATAD1Q8NBU5 361 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 OR4L1Q8NH43 312 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 C3orf30Q96M34 536 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 HOPXQ9BPY8 73 aaPredicted RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 C1QTNF1Q9BXJ1 281 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 POLR1EQ9GZS1 481 aaKnown RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 ALG2Q9H553 416 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 MARCH2Q9P0N8 246 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 EBF1Q9UH73 591 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 SLC30A1Q9Y6M5 507 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 A8MX80 341 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 MAFKO60675 156 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 PRSS56P0CW18 603 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 FCGR1AP12314 374 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 RPL26P61254 145 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 BRMS1LQ5PSV4 323 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 GLB1LQ6UWU2 654 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 OR4K2Q8NGD2 314 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 TMEM30AQ9NV96 361 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 U3KQV3 271 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 GOLGA4Q13439 2230 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 A0A1W2PPW3 197 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 C2orf81A6NN90 581 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 H0Y626 953 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 FBP2O00757 339 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 ARPC2O15144 300 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 GPR182O15218 404 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 MAN1A2O60476 641 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 SLC22A3O75751 556 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 TRIM16O95361 564 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 OCM2P0CE71 109 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 OCMP0CE72 109 aaPredicted RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 GGT5P36269 586 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 MRPS6P82932 125 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 CCL14Q16627 93 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 PAQR3Q6TCH7 311 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 KCTD8Q6ZWB6 473 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 GPSM1Q86YR5 675 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 GTF3C2Q8WUA4 911 aaPredicted RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.84□□□□□ -0.51
MSH6-204ENST00000445503 C12orf43Q96C57 262 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 MTFMTQ96DP5 389 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 CENPNQ96H22 339 aaPredicted RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 GPR21Q99679 349 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 MUC3BQ9H195 1237 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 ZFP14Q9HCL3 533 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 TNFRSF12AQ9NP84 129 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 IGSF5Q9NSI5 407 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 HS3ST4Q9Y661 456 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 TPD52L2O43399 206 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 SBK3P0C264 359 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 HAPLN1P10915 354 aaPredicted RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 CDK4P11802 303 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 TPP2P29144 1249 aaPredicted RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 RPS9P46781 194 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 INHBCP55103 352 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 BNIP3Q12983 259 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 ERI1Q8IV48 349 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 DCP1BQ8IZD4 617 aaKnown RBP11.84□□□□□ -0.51
MSH6-204ENST00000445503 C3orf58Q8NDZ4 430 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 OSCP1Q8WVF1 389 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 LRRC58Q96CX6 371 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 GPR63Q9BZJ6 419 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 SMOXQ9NWM0 555 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 PLK2Q9NYY3 685 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 GMIPQ9P107 970 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 TRPV2Q9Y5S1 764 aa11.84□□□□□ -0.51
MSH6-204ENST00000445503 MOXD2PA6NHM9 499 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 H3BNH8 94 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 J3QRK9 145 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 ACOT8O14734 319 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 HS6ST1O60243 411 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 DEAF1O75398 565 aaPredicted RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 GPR15P49685 360 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 FOXA1P55317 472 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 MTPNP58546 118 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 SH3BP2P78314 561 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 TRAP1Q12931 704 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms