RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RNF10Q8N5U6 811 aaKnown RBP15.15■□□□□ 0.02
LIMS3-201ENST00000437679 ACTL9Q8TC94 416 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 ALG3Q92685 438 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 SCAMP4Q969E2 229 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 TRIB3Q96RU7 358 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 BOCQ9BWV1 1114 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 MRPL40Q9NQ50 206 aaKnown RBP15.15■□□□□ 0.02
LIMS3-201ENST00000437679 FAM153AQ9UHL3 310 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 TRHDEQ9UKU6 1024 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 ADGRG1Q9Y653 693 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 AKAP13Q12802 2813 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 ASXL3Q9C0F0 2248 aa15.15■□□□□ 0.02
LIMS3-201ENST00000437679 LY6G6EA0A0G2JKS1 128 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 PRSS38A1L453 326 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 CPED1A4D0V7 1026 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 RGSL1A5PLK6 1076 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 GOLGA6L9A6NEM1 432 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 KRT86O43790 486 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 NDST3O95803 873 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 GP1BAP07359 652 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 CD68P34810 354 aaPredicted RBP15.14■□□□□ 0.01
LIMS3-201ENST00000437679 SPINT3P49223 89 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 EIF3EP60228 445 aaKnown RBP15.14■□□□□ 0.01
LIMS3-201ENST00000437679 CDKN3Q16667 212 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 ST3GAL2Q16842 350 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 AADACL2Q6P093 401 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 EFL1Q7Z2Z2 1120 aaKnown RBP15.14■□□□□ 0.01
LIMS3-201ENST00000437679 CDKL3Q8IVW4 592 aaPredicted RBP15.14■□□□□ 0.01
LIMS3-201ENST00000437679 ZNF567Q8N184 647 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 IFI44Q8TCB0 444 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 FCRL5Q96RD9 977 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 SRPK1Q96SB4 655 aaKnown RBP15.14■□□□□ 0.01
LIMS3-201ENST00000437679 HERPUD2Q9BSE4 406 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 RIOK2Q9BVS4 552 aaKnown RBP15.14■□□□□ 0.01
LIMS3-201ENST00000437679 CARS2Q9HA77 564 aaKnown RBP15.14■□□□□ 0.01
LIMS3-201ENST00000437679 ZFYVE1Q9HBF4 777 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 MAGEE1Q9HCI5 957 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 UBP1Q9NZI7 540 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 GULP1Q9UBP9 304 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 PACSIN2Q9UNF0 486 aaPredicted RBP15.14■□□□□ 0.01
LIMS3-201ENST00000437679 GPR34Q9UPC5 381 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 U3KQA8 63 aa15.14■□□□□ 0.01
LIMS3-201ENST00000437679 NRDCO43847 1150 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 ZNF189O75820 626 aaPredicted RBP15.13■□□□□ 0.01
LIMS3-201ENST00000437679 STK10O94804 968 aaKnown RBP15.13■□□□□ 0.01
LIMS3-201ENST00000437679 CEACAM5P06731 702 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 RBL1P28749 1068 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 INSM1Q01101 510 aaPredicted RBP15.13■□□□□ 0.01
LIMS3-201ENST00000437679 KCTD16Q68DU8 428 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 GUSBP11Q6P575 273 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 DARS2Q6PI48 645 aaKnown RBP15.13■□□□□ 0.01
LIMS3-201ENST00000437679 DOK6Q6PKX4 331 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 LYSMD3Q7Z3D4 306 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 TAF8Q7Z7C8 310 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 MARCH9Q86YJ5 346 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 SLC35F3Q8IY50 421 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 ARL10Q8N8L6 244 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 KDF1Q8NAX2 398 aaPredicted RBP15.13■□□□□ 0.01
LIMS3-201ENST00000437679 NAT6Q93015 286 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 HIC2Q96JB3 615 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 FRMD8Q9BZ67 464 aaPredicted RBP15.13■□□□□ 0.01
LIMS3-201ENST00000437679 GPR63Q9BZJ6 419 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 TMEM168Q9H0V1 697 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 ABCG4Q9H172 646 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 FAM83DQ9H4H8 585 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 SUDS3Q9H7L9 328 aaPredicted RBP15.13■□□□□ 0.01
LIMS3-201ENST00000437679 SIRPGQ9P1W8 387 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 RSPH14Q9UHP6 348 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 GUCA1BQ9UMX6 200 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 SHOC2Q9UQ13 582 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 CLCA2Q9UQC9 943 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 CAPN6Q9Y6Q1 641 aa15.13■□□□□ 0.01
LIMS3-201ENST00000437679 CACNA1BQ00975 2339 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 RP1P56715 2156 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 FRYQ5TBA9 3013 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 EME2A4GXA9 379 aaPredicted RBP15.12■□□□□ 0.01
LIMS3-201ENST00000437679 F5H423 210 aaPredicted RBP15.12■□□□□ 0.01
LIMS3-201ENST00000437679 DDX3YO15523 660 aaKnown RBP15.12■□□□□ 0.01
LIMS3-201ENST00000437679 OPA1O60313 960 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 SOD1P00441 154 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 PIRTP0C851 137 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 RBP3P10745 1247 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 GNPDA1P46926 289 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 WNT3AP56704 352 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 CLDN6P56747 220 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 MPP3Q13368 585 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 ITPRIPL1Q6GPH6 555 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 KDELC1Q6UW63 502 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 LRRC8AQ8IWT6 810 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 PDCD7Q8N8D1 485 aaKnown RBP15.12■□□□□ 0.01
LIMS3-201ENST00000437679 TTC13Q8NBP0 860 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 FAM46DQ8NEK8 389 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 IPMKQ8NFU5 416 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 MAPK15Q8TD08 544 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 UBE2Q2Q8WVN8 375 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 ZCCHC14Q8WYQ9 949 aaKnown RBP15.12■□□□□ 0.01
LIMS3-201ENST00000437679 HES6Q96HZ4 224 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 AGAP2Q99490 1192 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 C10orf88Q9H8K7 445 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 RAD18Q9NS91 495 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms